Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20090

Experiment: Recovery broth with Chenodeoxycholic 1.3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Chenodeoxycholic 1.3 mM
2,307,078	-				+0.2
2,307,154	-				+0.3
2,307,156	-				-1.0
2,307,205	+				-0.1
2,307,205	+				-0.0
2,307,205	+				+0.8
2,307,205	-				+0.7
2,307,207	-				+0.3
2,307,207	-				-0.3
2,307,207	-				+0.3
2,307,222	+				+1.1
2,307,222	+				+0.0
2,307,222	+				+1.0
2,307,222	+				+0.5
2,307,222	+				+0.3
2,307,263	+				+0.0
2,307,271	-				+0.6
2,307,271	-				+0.0
2,307,271	-				+1.0
2,307,283	+				-1.6
2,307,287	+				+0.5
2,307,288	+				-0.8
2,307,288	+				+0.0
2,307,291	-				-0.0
2,307,291	-				-0.6
2,307,293	+				-0.5
2,307,296	-				+1.3
2,307,296	-				+0.6
2,307,296	-				+0.4
2,307,321	+				+0.2
2,307,325	+				-0.6
2,307,327	+				+0.8
2,307,329	-				+0.3
2,307,329	-				+1.6
2,307,329	-				+1.1
2,307,329	-				+0.2
2,307,329	-				-0.9
2,307,329	-				-0.4
2,307,332	+				+0.1
2,307,332	+				+0.0
2,307,333	-				+1.7
2,307,337	+				+0.8
2,307,337	+				+3.1
2,307,337	+				-0.5
2,307,340	-				-0.3
2,307,340	-				+1.7
2,307,340	-				+0.7
2,307,346	+				+0.9
2,307,354	+				+0.8
2,307,354	+				+1.2
2,307,354	+				+0.9
2,307,356	+				-2.3
2,307,373	-		BBR_RS20085	0.12	+1.7
2,307,408	-		BBR_RS20085	0.17	+0.8
2,307,421	+		BBR_RS20085	0.18	+0.6
2,307,421	+		BBR_RS20085	0.18	+1.8
2,307,421	+		BBR_RS20085	0.18	+1.6
2,307,427	-		BBR_RS20085	0.19	-0.8
2,307,429	-		BBR_RS20085	0.19	-1.0
2,307,438	+		BBR_RS20085	0.21	+0.4
2,307,440	+		BBR_RS20085	0.21	+1.2
2,307,464	+		BBR_RS20085	0.24	+0.8
2,307,470	+		BBR_RS20085	0.25	+0.9
2,307,492	+		BBR_RS20085	0.28	-1.3
2,307,492	+		BBR_RS20085	0.28	+1.8
2,307,492	+		BBR_RS20085	0.28	+0.9
2,307,500	-		BBR_RS20085	0.29	-0.3
2,307,500	-		BBR_RS20085	0.29	+1.8
2,307,505	-		BBR_RS20085	0.30	+0.8
2,307,514	+		BBR_RS20085	0.31	-0.4
2,307,529	-		BBR_RS20085	0.33	+1.2
2,307,551	-		BBR_RS20085	0.37	-0.5
2,307,551	-		BBR_RS20085	0.37	+1.2
2,307,551	-		BBR_RS20085	0.37	+1.0
2,307,553	+		BBR_RS20085	0.37	+0.7
2,307,556	-		BBR_RS20085	0.37	+1.4
2,307,561	-		BBR_RS20085	0.38	+1.2
2,307,561	-		BBR_RS20085	0.38	+1.5
2,307,578	-		BBR_RS20085	0.40	+0.1
2,307,598	+		BBR_RS20085	0.43	+1.7
2,307,598	+		BBR_RS20085	0.43	+0.5
2,307,598	+		BBR_RS20085	0.43	-0.4
2,307,598	+		BBR_RS20085	0.43	-0.6
2,307,600	-		BBR_RS20085	0.43	-0.6
2,307,600	-		BBR_RS20085	0.43	-0.2
2,307,606	-		BBR_RS20085	0.44	+0.0
2,307,606	-		BBR_RS20085	0.44	+0.7
2,307,628	+		BBR_RS20085	0.47	+1.2
2,307,628	+		BBR_RS20085	0.47	-0.4
2,307,628	+		BBR_RS20085	0.47	+0.2
2,307,630	+		BBR_RS20085	0.48	+2.2
2,307,630	+		BBR_RS20085	0.48	+1.0
2,307,636	-		BBR_RS20085	0.48	+0.9
2,307,636	-		BBR_RS20085	0.48	+0.2
2,307,636	-		BBR_RS20085	0.48	-0.2
2,307,636	-		BBR_RS20085	0.48	+0.5
2,307,638	-		BBR_RS20085	0.49	+0.7
2,307,638	-		BBR_RS20085	0.49	+1.8
2,307,638	-		BBR_RS20085	0.49	+0.0
2,307,641	-		BBR_RS20085	0.49	+2.4
2,307,656	+		BBR_RS20085	0.51	+0.8
2,307,656	-		BBR_RS20085	0.51	+1.8
2,307,661	+		BBR_RS20085	0.52	+1.6
2,307,664	-		BBR_RS20085	0.52	+0.0
2,307,666	-		BBR_RS20085	0.53	+0.3
2,307,666	-		BBR_RS20085	0.53	-0.6
2,307,666	-		BBR_RS20085	0.53	+1.6
2,307,667	+		BBR_RS20085	0.53	+0.5
2,307,667	+		BBR_RS20085	0.53	+0.4
2,307,668	+		BBR_RS20085	0.53	+0.8
2,307,674	+		BBR_RS20085	0.54	+1.6
2,307,686	+		BBR_RS20085	0.55	-1.4
2,307,691	+		BBR_RS20085	0.56	-0.5
2,307,694	-		BBR_RS20085	0.57	+2.4
2,307,694	-		BBR_RS20085	0.57	-0.8
2,307,694	-		BBR_RS20085	0.57	+1.4
2,307,708	+		BBR_RS20085	0.59	+0.3
2,307,717	+		BBR_RS20085	0.60	+1.4
2,307,717	+		BBR_RS20085	0.60	-0.2
2,307,717	+		BBR_RS20085	0.60	-0.6
2,307,727	+		BBR_RS20085	0.61	+0.5
2,307,727	+		BBR_RS20085	0.61	-0.1
2,307,732	-		BBR_RS20085	0.62	-2.0
2,307,735	-		BBR_RS20085	0.62	-0.5
2,307,735	-		BBR_RS20085	0.62	-1.7
2,307,735	-		BBR_RS20085	0.62	-0.5
2,307,736	-		BBR_RS20085	0.62	+2.2
2,307,762	+		BBR_RS20085	0.66	+0.2
2,307,762	+		BBR_RS20085	0.66	+0.7
2,307,771	+		BBR_RS20085	0.67	+0.7
2,307,782	+		BBR_RS20085	0.69	-0.7
2,307,801	-		BBR_RS20085	0.72	-0.9
2,307,801	-		BBR_RS20085	0.72	-0.3
2,307,802	-		BBR_RS20085	0.72	+0.4
2,307,814	-		BBR_RS20085	0.73	+1.0
2,307,820	-		BBR_RS20085	0.74	+0.5
2,307,845	-		BBR_RS20085	0.78	-0.0
2,307,862	+		BBR_RS20085	0.80	+1.5
2,307,862	-		BBR_RS20085	0.80	+1.7
2,307,864	+		BBR_RS20085	0.80	-1.0
2,307,864	+		BBR_RS20085	0.80	+0.4
2,307,864	+		BBR_RS20085	0.80	+2.1
2,307,867	+		BBR_RS20085	0.81	+1.5
2,307,871	-		BBR_RS20085	0.81	+0.9
2,307,871	-		BBR_RS20085	0.81	+0.7
2,307,871	-		BBR_RS20085	0.81	+0.2
2,307,903	-		BBR_RS20085	0.86	-1.0
2,307,944	-				+1.7
2,307,944	-				+0.4
2,307,973	+				-1.0
2,307,986	-				-1.1
2,308,001	+				-0.3
2,308,005	+				-0.5
2,308,005	-				+0.5
2,308,006	-				-0.4
2,308,008	+				-0.5
2,308,010	+				+0.8
2,308,015	+				-0.2
2,308,015	+				+1.2
2,308,015	+				+1.0
2,308,015	+				+0.0
2,308,015	+				-0.1
2,308,015	+				-0.0
2,308,015	+				-0.0
2,308,015	+				+0.8
2,308,015	+				-0.2
2,308,015	+				-0.6
2,308,015	+				+0.8
2,308,016	-				+1.1
2,308,018	+				+0.6
2,308,018	-				-0.1
2,308,018	-				+0.2
2,308,023	+				+0.4
2,308,023	-				-0.1
2,308,023	-				-1.1
2,308,023	-				-0.9
2,308,023	-				+0.2
2,308,023	-				+0.8
2,308,023	-				-0.3
2,308,036	+				+0.0
2,308,071	+				-1.1
2,308,072	+				+0.3
2,308,074	+				-0.2
2,308,080	-				+0.0
2,308,092	+				-0.4
2,308,092	+				+0.8
2,308,103	-				+0.3
2,308,129	+		BBR_RS20090	0.14	-0.2
2,308,129	+		BBR_RS20090	0.14	-0.5
2,308,129	+		BBR_RS20090	0.14	+0.4
2,308,132	+		BBR_RS20090	0.15	-0.4
2,308,137	-		BBR_RS20090	0.16	-2.1
2,308,137	-		BBR_RS20090	0.16	-1.2
2,308,144	+		BBR_RS20090	0.18	+0.4
2,308,144	+		BBR_RS20090	0.18	-0.3
2,308,145	+		BBR_RS20090	0.19	+0.4
2,308,174	+		BBR_RS20090	0.26	-0.5
2,308,179	+		BBR_RS20090	0.28	-1.7
2,308,182	-		BBR_RS20090	0.28	-1.9
2,308,185	+		BBR_RS20090	0.29	-1.6
2,308,193	+		BBR_RS20090	0.31	-1.7
2,308,193	+		BBR_RS20090	0.31	-0.2
2,308,207	+		BBR_RS20090	0.35	-0.2
2,308,207	+		BBR_RS20090	0.35	-1.8
2,308,222	+		BBR_RS20090	0.39	-0.0
2,308,228	+		BBR_RS20090	0.40	+0.3
2,308,230	-		BBR_RS20090	0.41	-0.7
2,308,230	-		BBR_RS20090	0.41	-0.0
2,308,230	-		BBR_RS20090	0.41	-2.9
2,308,257	+		BBR_RS20090	0.48	-0.9
2,308,257	+		BBR_RS20090	0.48	+0.3
2,308,265	-		BBR_RS20090	0.50	+0.7
2,308,267	+		BBR_RS20090	0.51	-0.2
2,308,267	+		BBR_RS20090	0.51	-0.6
2,308,275	-		BBR_RS20090	0.53	+0.7
2,308,275	-		BBR_RS20090	0.53	-1.0
2,308,275	-		BBR_RS20090	0.53	-0.9
2,308,280	+		BBR_RS20090	0.54	+0.6
2,308,299	+		BBR_RS20090	0.59	-0.5
2,308,307	-		BBR_RS20090	0.61	+0.3
2,308,307	-		BBR_RS20090	0.61	-1.7
2,308,314	-		BBR_RS20090	0.63	-2.3
2,308,324	+		BBR_RS20090	0.66	-0.1
2,308,324	+		BBR_RS20090	0.66	+0.5
2,308,324	+		BBR_RS20090	0.66	-1.7
2,308,324	+		BBR_RS20090	0.66	+0.0
2,308,330	-		BBR_RS20090	0.67	-1.7
2,308,330	-		BBR_RS20090	0.67	+0.2
2,308,332	-		BBR_RS20090	0.68	+0.7
2,308,332	-		BBR_RS20090	0.68	+0.9
2,308,332	-		BBR_RS20090	0.68	-0.8
2,308,332	-		BBR_RS20090	0.68	+0.1
2,308,338	-		BBR_RS20090	0.70	-0.2
2,308,384	+		BBR_RS20090	0.82	-0.4
2,308,394	+		BBR_RS20090	0.84	+0.4
2,308,414	-		BBR_RS20090	0.90	-1.4
2,308,448	-				-1.9
2,308,453	-				-0.6
2,308,462	-				-0.8
2,308,462	-				-0.5
2,308,486	+				+0.1
2,308,494	-				-0.6
2,308,494	-				-0.3
2,308,517	-				+0.7
2,308,522	+				-0.5
2,308,522	+				-0.5
2,308,530	-				-0.9
2,308,535	+				-0.7
2,308,543	-				+0.3
2,308,545	+				-1.6
2,308,545	+				+0.3
2,308,545	-				-0.2
2,308,553	-				-0.6
2,308,566	+				-2.5
2,308,566	+				+1.0
2,308,574	-				-0.6
2,308,574	-				-0.4
2,308,575	-				-0.6
2,308,609	-				-0.3
2,308,630	-		BBR_RS20095	0.11	+0.9
2,308,639	-		BBR_RS20095	0.12	+0.5
2,308,641	+		BBR_RS20095	0.12	-0.1
2,308,656	-		BBR_RS20095	0.14	+0.5
2,308,661	+		BBR_RS20095	0.15	+0.2
2,308,674	-		BBR_RS20095	0.16	-0.3
2,308,682	-		BBR_RS20095	0.17	+1.1
2,308,698	-		BBR_RS20095	0.20	-0.4
2,308,719	-		BBR_RS20095	0.22	+1.7
2,308,724	+		BBR_RS20095	0.23	-0.2
2,308,726	-		BBR_RS20095	0.23	-0.0
2,308,751	+		BBR_RS20095	0.26	+0.3
2,308,751	+		BBR_RS20095	0.26	+1.0
2,308,751	+		BBR_RS20095	0.26	+0.3
2,308,751	+		BBR_RS20095	0.26	-0.6
2,308,751	+		BBR_RS20095	0.26	+0.5
2,308,768	-		BBR_RS20095	0.29	-0.5
2,308,770	-		BBR_RS20095	0.29	+1.1
2,308,773	+		BBR_RS20095	0.29	-0.5
2,308,775	+		BBR_RS20095	0.30	-0.6
2,308,775	-		BBR_RS20095	0.30	+0.6
2,308,778	-		BBR_RS20095	0.30	+0.1
2,308,783	-		BBR_RS20095	0.31	+0.2
2,308,783	-		BBR_RS20095	0.31	+0.1
2,308,783	-		BBR_RS20095	0.31	-0.0
2,308,784	-		BBR_RS20095	0.31	-0.2
2,308,799	+		BBR_RS20095	0.33	-0.5
2,308,799	+		BBR_RS20095	0.33	+0.3
2,308,807	-		BBR_RS20095	0.34	+0.1
2,308,807	-		BBR_RS20095	0.34	-0.9
2,308,831	+		BBR_RS20095	0.37	-0.3
2,308,831	-		BBR_RS20095	0.37	-1.5
2,308,839	-		BBR_RS20095	0.38	-0.3
2,308,839	-		BBR_RS20095	0.38	+0.5
2,308,839	-		BBR_RS20095	0.38	+0.5
2,308,846	-		BBR_RS20095	0.39	+0.8
2,308,860	+		BBR_RS20095	0.41	-1.0
2,308,862	+		BBR_RS20095	0.41	+1.1
2,308,870	+		BBR_RS20095	0.42	-2.3
2,308,882	+		BBR_RS20095	0.43	-0.1
2,308,882	+		BBR_RS20095	0.43	-0.9
2,308,888	+		BBR_RS20095	0.44	-0.0
2,308,892	+		BBR_RS20095	0.45	-1.7
2,308,895	-		BBR_RS20095	0.45	+0.7
2,308,900	-		BBR_RS20095	0.46	-0.1
2,308,902	+		BBR_RS20095	0.46	-0.3
2,308,910	-		BBR_RS20095	0.47	+0.7
2,308,936	+		BBR_RS20095	0.51	-0.5
2,308,936	+		BBR_RS20095	0.51	+0.3
2,308,952	-		BBR_RS20095	0.53	-0.6
2,308,973	+		BBR_RS20095	0.55	+0.6
2,308,984	+		BBR_RS20095	0.57	+0.2
2,308,984	+		BBR_RS20095	0.57	+0.3
2,308,984	+		BBR_RS20095	0.57	-0.7
2,308,984	+		BBR_RS20095	0.57	-0.3
2,308,992	-		BBR_RS20095	0.58	+0.8
2,308,994	+		BBR_RS20095	0.58	+1.1
2,309,003	+		BBR_RS20095	0.59	+0.4
2,309,016	+		BBR_RS20095	0.61	+0.3
2,309,024	-		BBR_RS20095	0.62	-0.9
2,309,024	-		BBR_RS20095	0.62	+0.4
2,309,026	+		BBR_RS20095	0.62	-0.1
2,309,029	-		BBR_RS20095	0.63	-1.8
2,309,029	-		BBR_RS20095	0.63	-0.2
2,309,031	+		BBR_RS20095	0.63	-0.8
2,309,034	-		BBR_RS20095	0.63	-0.2
2,309,036	+		BBR_RS20095	0.64	+0.3
2,309,038	+		BBR_RS20095	0.64	+0.7
2,309,044	-		BBR_RS20095	0.65	+0.6
2,309,046	-		BBR_RS20095	0.65	-1.1
2,309,048	+		BBR_RS20095	0.65	+0.3
2,309,056	-		BBR_RS20095	0.66	+0.0
2,309,056	-		BBR_RS20095	0.66	-0.3
2,309,056	-		BBR_RS20095	0.66	-0.2
2,309,058	+		BBR_RS20095	0.66	-0.1
2,309,058	+		BBR_RS20095	0.66	+0.8
2,309,066	-		BBR_RS20095	0.67	+0.8
2,309,080	+		BBR_RS20095	0.69	+0.7
2,309,080	+		BBR_RS20095	0.69	+1.5
2,309,086	-		BBR_RS20095	0.70	-0.9
2,309,094	+		BBR_RS20095	0.71	+0.1
2,309,104	+		BBR_RS20095	0.72	+0.1
2,309,114	+		BBR_RS20095	0.74	+0.5
2,309,114	+		BBR_RS20095	0.74	+0.8
2,309,114	+		BBR_RS20095	0.74	-0.1
2,309,114	+		BBR_RS20095	0.74	+0.9
2,309,122	-		BBR_RS20095	0.75	-1.1
2,309,157	+		BBR_RS20095	0.79	-0.1
2,309,170	+		BBR_RS20095	0.81	+0.3
2,309,170	+		BBR_RS20095	0.81	+0.3
2,309,180	+		BBR_RS20095	0.82	+1.0
2,309,180	+		BBR_RS20095	0.82	+0.5
2,309,188	-		BBR_RS20095	0.83	-2.3
2,309,188	-		BBR_RS20095	0.83	+0.7
2,309,196	-		BBR_RS20095	0.84	-0.5
2,309,215	-		BBR_RS20095	0.87	+0.4
2,309,224	-		BBR_RS20095	0.88	+0.8
2,309,271	+				+0.1
2,309,276	+				+1.0
2,309,289	+				-0.4
2,309,289	+				-0.3
2,309,297	-				+1.8
2,309,297	-				-0.1
2,309,316	+				+0.7
2,309,316	+				+0.0
2,309,316	+				-1.6
2,309,321	+				+0.5
2,309,321	+				+0.9
2,309,321	+				+1.1
2,309,324	-				-1.1
2,309,324	-				+0.4
2,309,326	+				-0.1
2,309,326	+				+2.3
2,309,327	-				-0.7
2,309,329	-				+0.1
2,309,329	-				-0.5
2,309,329	-				-0.5
2,309,333	+				+0.2
2,309,333	+				+0.1
2,309,339	-				+0.2
2,309,341	-				+0.6
2,309,341	-				+0.3
2,309,341	-				-1.4
2,309,381	+				-0.6
2,309,438	-				+0.1
2,309,439	-				+1.5
2,309,442	+				-1.7
2,309,449	-				-0.1
2,309,450	-				+0.8