Experiment: Recovery broth with Chenodeoxycholic 1.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13835 and BBR_RS13840 are separated by 123 nucleotides BBR_RS13840 and BBR_RS13845 are separated by 91 nucleotides BBR_RS13845 and BBR_RS13850 are separated by 570 nucleotides
BBR_RS13835: BBR_RS13835 - FAD-dependent oxidoreductase, at 882,198 to 883,691
_RS13835
BBR_RS13840: BBR_RS13840 - DUF3043 domain-containing protein, at 883,815 to 884,435
_RS13840
BBR_RS13845: BBR_RS13845 - dipeptidase, at 884,527 to 885,894
_RS13845
BBR_RS13850: BBR_RS13850 - ABC transporter permease, at 886,465 to 887,064
_RS13850
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2 at 883.535 kb on - strand, within BBR_RS13835 at 883.557 kb on + strand at 883.565 kb on - strand at 883.565 kb on - strand at 883.565 kb on - strand at 883.566 kb on + strand at 883.607 kb on - strand at 883.622 kb on - strand at 883.722 kb on + strand at 883.723 kb on + strand at 883.738 kb on - strand at 883.797 kb on + strand at 883.843 kb on + strand at 883.872 kb on - strand at 883.926 kb on - strand, within BBR_RS13840 at 883.959 kb on + strand, within BBR_RS13840 at 883.968 kb on - strand, within BBR_RS13840 at 883.968 kb on - strand, within BBR_RS13840 at 884.053 kb on - strand, within BBR_RS13840 at 884.055 kb on - strand, within BBR_RS13840 at 884.190 kb on - strand, within BBR_RS13840 at 884.200 kb on + strand, within BBR_RS13840 at 884.322 kb on - strand, within BBR_RS13840 at 884.423 kb on + strand at 884.431 kb on - strand at 884.475 kb on + strand at 884.475 kb on + strand at 884.475 kb on + strand at 884.509 kb on + strand at 884.550 kb on - strand at 884.758 kb on + strand, within BBR_RS13845 at 884.797 kb on + strand, within BBR_RS13845 at 884.802 kb on + strand, within BBR_RS13845 at 884.814 kb on + strand, within BBR_RS13845 at 884.815 kb on - strand, within BBR_RS13845 at 884.821 kb on + strand, within BBR_RS13845 at 884.898 kb on - strand, within BBR_RS13845 at 884.966 kb on + strand, within BBR_RS13845 at 884.987 kb on - strand, within BBR_RS13845 at 885.004 kb on + strand, within BBR_RS13845 at 885.031 kb on - strand, within BBR_RS13845 at 885.089 kb on - strand, within BBR_RS13845 at 885.109 kb on + strand, within BBR_RS13845 at 885.114 kb on - strand, within BBR_RS13845 at 885.128 kb on - strand, within BBR_RS13845 at 885.136 kb on - strand, within BBR_RS13845 at 885.146 kb on + strand, within BBR_RS13845 at 885.180 kb on + strand, within BBR_RS13845 at 885.193 kb on - strand, within BBR_RS13845 at 885.218 kb on + strand, within BBR_RS13845 at 885.237 kb on + strand, within BBR_RS13845 at 885.420 kb on + strand, within BBR_RS13845 at 885.454 kb on + strand, within BBR_RS13845 at 885.462 kb on - strand, within BBR_RS13845 at 885.472 kb on - strand, within BBR_RS13845 at 885.584 kb on + strand, within BBR_RS13845 at 885.586 kb on + strand, within BBR_RS13845 at 885.598 kb on + strand, within BBR_RS13845 at 885.621 kb on + strand, within BBR_RS13845 at 885.623 kb on + strand, within BBR_RS13845 at 885.629 kb on - strand, within BBR_RS13845 at 885.677 kb on - strand, within BBR_RS13845 at 885.689 kb on + strand, within BBR_RS13845 at 885.697 kb on - strand, within BBR_RS13845 at 885.698 kb on + strand, within BBR_RS13845 at 885.709 kb on + strand, within BBR_RS13845 at 885.719 kb on + strand, within BBR_RS13845 at 885.729 kb on + strand, within BBR_RS13845 at 885.734 kb on + strand, within BBR_RS13845 at 885.742 kb on - strand, within BBR_RS13845 at 885.771 kb on - strand at 885.810 kb on - strand at 885.812 kb on + strand at 885.820 kb on - strand at 885.820 kb on - strand at 885.820 kb on - strand at 885.820 kb on - strand at 885.820 kb on - strand at 885.904 kb on + strand at 885.904 kb on + strand at 885.904 kb on + strand at 885.904 kb on + strand at 885.904 kb on + strand at 885.910 kb on + strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.912 kb on - strand at 885.957 kb on - strand at 886.011 kb on + strand at 886.036 kb on + strand at 886.036 kb on + strand at 886.050 kb on + strand at 886.090 kb on + strand at 886.123 kb on + strand at 886.275 kb on - strand at 886.275 kb on - strand at 886.283 kb on - strand at 886.290 kb on - strand at 886.298 kb on - strand at 886.332 kb on - strand at 886.342 kb on + strand at 886.359 kb on - strand at 886.359 kb on - strand at 886.406 kb on + strand at 886.427 kb on + strand at 886.427 kb on + strand at 886.461 kb on + strand at 886.561 kb on + strand, within BBR_RS13850 at 886.572 kb on + strand, within BBR_RS13850 at 886.573 kb on + strand, within BBR_RS13850 at 886.590 kb on + strand, within BBR_RS13850 at 886.688 kb on + strand, within BBR_RS13850 at 886.691 kb on - strand, within BBR_RS13850 at 886.722 kb on + strand, within BBR_RS13850 at 886.751 kb on - strand, within BBR_RS13850 at 886.798 kb on + strand, within BBR_RS13850 at 886.844 kb on + strand, within BBR_RS13850 at 886.844 kb on + strand, within BBR_RS13850 at 886.844 kb on + strand, within BBR_RS13850 at 886.885 kb on + strand, within BBR_RS13850 at 886.890 kb on + strand, within BBR_RS13850
Per-strain Table
Position Strand Gene LocusTag Fraction Recovery broth with Chenodeoxycholic 1.3 mM remove 883,535 - BBR_RS13835 0.89 +0.2 883,557 + +0.7 883,565 - +1.8 883,565 - +0.8 883,565 - +0.0 883,566 + -0.9 883,607 - +0.1 883,622 - -0.8 883,722 + -0.1 883,723 + +0.7 883,738 - -0.7 883,797 + -0.3 883,843 + -1.0 883,872 - +0.0 883,926 - BBR_RS13840 0.18 +0.6 883,959 + BBR_RS13840 0.23 -0.4 883,968 - BBR_RS13840 0.25 +0.3 883,968 - BBR_RS13840 0.25 -0.5 884,053 - BBR_RS13840 0.38 -0.6 884,055 - BBR_RS13840 0.39 -1.4 884,190 - BBR_RS13840 0.60 +0.3 884,200 + BBR_RS13840 0.62 +0.6 884,322 - BBR_RS13840 0.82 +0.5 884,423 + -1.3 884,431 - -0.3 884,475 + +1.1 884,475 + +1.3 884,475 + -0.2 884,509 + +1.0 884,550 - +0.7 884,758 + BBR_RS13845 0.17 -1.0 884,797 + BBR_RS13845 0.20 -0.1 884,802 + BBR_RS13845 0.20 -0.1 884,814 + BBR_RS13845 0.21 -1.8 884,815 - BBR_RS13845 0.21 -1.2 884,821 + BBR_RS13845 0.21 -0.1 884,898 - BBR_RS13845 0.27 +0.8 884,966 + BBR_RS13845 0.32 -0.1 884,987 - BBR_RS13845 0.34 -0.1 885,004 + BBR_RS13845 0.35 +0.8 885,031 - BBR_RS13845 0.37 +1.2 885,089 - BBR_RS13845 0.41 -0.2 885,109 + BBR_RS13845 0.43 +0.3 885,114 - BBR_RS13845 0.43 +1.0 885,128 - BBR_RS13845 0.44 +1.7 885,136 - BBR_RS13845 0.45 -0.6 885,146 + BBR_RS13845 0.45 -0.5 885,180 + BBR_RS13845 0.48 -1.2 885,193 - BBR_RS13845 0.49 -1.0 885,218 + BBR_RS13845 0.51 -1.3 885,237 + BBR_RS13845 0.52 +0.1 885,420 + BBR_RS13845 0.65 -0.0 885,454 + BBR_RS13845 0.68 -1.1 885,462 - BBR_RS13845 0.68 +1.9 885,472 - BBR_RS13845 0.69 -0.9 885,584 + BBR_RS13845 0.77 -1.0 885,586 + BBR_RS13845 0.77 +0.0 885,598 + BBR_RS13845 0.78 -1.0 885,621 + BBR_RS13845 0.80 -0.3 885,623 + BBR_RS13845 0.80 -0.3 885,629 - BBR_RS13845 0.81 +1.8 885,677 - BBR_RS13845 0.84 +0.8 885,689 + BBR_RS13845 0.85 -0.3 885,697 - BBR_RS13845 0.86 -0.2 885,698 + BBR_RS13845 0.86 -1.5 885,709 + BBR_RS13845 0.86 -0.8 885,719 + BBR_RS13845 0.87 +0.2 885,729 + BBR_RS13845 0.88 -0.8 885,734 + BBR_RS13845 0.88 -1.7 885,742 - BBR_RS13845 0.89 +0.3 885,771 - +1.1 885,810 - +0.3 885,812 + -0.5 885,820 - +0.0 885,820 - -0.4 885,820 - -1.1 885,820 - +0.5 885,820 - -1.2 885,904 + +0.7 885,904 + -1.0 885,904 + -0.4 885,904 + -1.1 885,904 + +0.1 885,910 + +0.3 885,912 - +1.0 885,912 - +1.0 885,912 - +0.7 885,912 - -0.7 885,912 - -0.0 885,912 - +0.1 885,912 - -0.1 885,912 - -0.4 885,912 - +1.6 885,912 - -1.7 885,957 - +1.1 886,011 + -0.9 886,036 + +0.2 886,036 + -0.1 886,050 + +0.2 886,090 + -0.0 886,123 + -0.1 886,275 - -0.6 886,275 - -0.5 886,283 - +0.3 886,290 - +1.6 886,298 - -1.1 886,332 - -0.6 886,342 + +1.0 886,359 - -0.2 886,359 - -0.2 886,406 + -0.8 886,427 + +1.6 886,427 + +0.4 886,461 + +1.8 886,561 + BBR_RS13850 0.16 +1.1 886,572 + BBR_RS13850 0.18 +0.5 886,573 + BBR_RS13850 0.18 +1.9 886,590 + BBR_RS13850 0.21 -0.8 886,688 + BBR_RS13850 0.37 -1.8 886,691 - BBR_RS13850 0.38 -1.9 886,722 + BBR_RS13850 0.43 -0.8 886,751 - BBR_RS13850 0.48 +0.8 886,798 + BBR_RS13850 0.56 +0.2 886,844 + BBR_RS13850 0.63 +1.0 886,844 + BBR_RS13850 0.63 +0.5 886,844 + BBR_RS13850 0.63 -0.8 886,885 + BBR_RS13850 0.70 +0.2 886,890 + BBR_RS13850 0.71 -0.9
Or see this region's nucleotide sequence