Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27370 and AO353_27375 are separated by 43 nucleotides AO353_27375 and AO353_27380 are separated by 131 nucleotides AO353_27380 and AO353_27385 are separated by 525 nucleotides
AO353_27370: AO353_27370 - terminase, at 5,979,349 to 5,981,238
_27370
AO353_27375: AO353_27375 - DNA packaging protein, at 5,981,282 to 5,981,806
_27375
AO353_27380: AO353_27380 - pyocin R2, holin, at 5,981,938 to 5,982,276
_27380
AO353_27385: AO353_27385 - hypothetical protein, at 5,982,802 to 5,983,164
_27385
Position (kb) 5981
5982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5980.377 kb on - strand, within AO353_27370 at 5980.377 kb on - strand, within AO353_27370 at 5980.481 kb on + strand, within AO353_27370 at 5980.481 kb on + strand, within AO353_27370 at 5980.481 kb on + strand, within AO353_27370 at 5980.481 kb on + strand, within AO353_27370 at 5980.481 kb on + strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.482 kb on - strand, within AO353_27370 at 5980.511 kb on + strand, within AO353_27370 at 5980.511 kb on + strand, within AO353_27370 at 5980.526 kb on + strand, within AO353_27370 at 5980.526 kb on + strand, within AO353_27370 at 5980.526 kb on + strand, within AO353_27370 at 5980.527 kb on - strand, within AO353_27370 at 5980.729 kb on - strand, within AO353_27370 at 5980.864 kb on - strand, within AO353_27370 at 5980.961 kb on + strand, within AO353_27370 at 5980.961 kb on + strand, within AO353_27370 at 5980.961 kb on + strand, within AO353_27370 at 5980.961 kb on + strand, within AO353_27370 at 5980.962 kb on - strand, within AO353_27370 at 5980.962 kb on - strand, within AO353_27370 at 5980.962 kb on - strand, within AO353_27370 at 5980.962 kb on - strand, within AO353_27370 at 5981.168 kb on + strand at 5981.210 kb on + strand at 5981.361 kb on + strand, within AO353_27375 at 5981.361 kb on + strand, within AO353_27375 at 5981.361 kb on + strand, within AO353_27375 at 5981.362 kb on - strand, within AO353_27375 at 5981.465 kb on + strand, within AO353_27375 at 5981.466 kb on - strand, within AO353_27375 at 5981.470 kb on + strand, within AO353_27375 at 5981.471 kb on - strand, within AO353_27375 at 5981.471 kb on - strand, within AO353_27375 at 5981.471 kb on - strand, within AO353_27375 at 5981.676 kb on + strand, within AO353_27375 at 5981.677 kb on - strand, within AO353_27375 at 5981.810 kb on + strand at 5981.810 kb on + strand at 5981.811 kb on - strand at 5981.811 kb on - strand at 5981.811 kb on - strand at 5981.811 kb on - strand at 5981.811 kb on - strand at 5981.939 kb on + strand at 5982.229 kb on + strand, within AO353_27380 at 5982.229 kb on + strand, within AO353_27380 at 5982.230 kb on - strand, within AO353_27380 at 5982.289 kb on - strand at 5982.357 kb on + strand at 5982.370 kb on + strand at 5982.371 kb on - strand at 5982.378 kb on - strand at 5982.410 kb on + strand at 5982.411 kb on - strand at 5982.427 kb on + strand at 5982.427 kb on + strand at 5982.427 kb on + strand at 5982.427 kb on + strand at 5982.427 kb on + strand at 5982.428 kb on - strand at 5982.509 kb on + strand at 5982.509 kb on + strand at 5982.509 kb on + strand at 5982.510 kb on - strand at 5982.646 kb on - strand at 5982.797 kb on + strand at 5982.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 5,980,377 - AO353_27370 0.54 -0.0 5,980,377 - AO353_27370 0.54 -0.4 5,980,481 + AO353_27370 0.60 -0.1 5,980,481 + AO353_27370 0.60 -0.4 5,980,481 + AO353_27370 0.60 +0.2 5,980,481 + AO353_27370 0.60 -0.1 5,980,481 + AO353_27370 0.60 +0.2 5,980,482 - AO353_27370 0.60 -0.7 5,980,482 - AO353_27370 0.60 -1.2 5,980,482 - AO353_27370 0.60 -1.0 5,980,482 - AO353_27370 0.60 -0.6 5,980,482 - AO353_27370 0.60 +0.8 5,980,482 - AO353_27370 0.60 -2.4 5,980,482 - AO353_27370 0.60 -0.0 5,980,511 + AO353_27370 0.61 +0.4 5,980,511 + AO353_27370 0.61 +0.5 5,980,526 + AO353_27370 0.62 +1.2 5,980,526 + AO353_27370 0.62 -0.8 5,980,526 + AO353_27370 0.62 +0.7 5,980,527 - AO353_27370 0.62 +1.1 5,980,729 - AO353_27370 0.73 +0.4 5,980,864 - AO353_27370 0.80 +0.2 5,980,961 + AO353_27370 0.85 -1.5 5,980,961 + AO353_27370 0.85 -1.3 5,980,961 + AO353_27370 0.85 -1.5 5,980,961 + AO353_27370 0.85 +0.3 5,980,962 - AO353_27370 0.85 -0.4 5,980,962 - AO353_27370 0.85 -0.2 5,980,962 - AO353_27370 0.85 -0.0 5,980,962 - AO353_27370 0.85 -0.1 5,981,168 + -0.8 5,981,210 + -0.4 5,981,361 + AO353_27375 0.15 -1.0 5,981,361 + AO353_27375 0.15 -1.1 5,981,361 + AO353_27375 0.15 +0.0 5,981,362 - AO353_27375 0.15 -2.1 5,981,465 + AO353_27375 0.35 -0.4 5,981,466 - AO353_27375 0.35 -2.0 5,981,470 + AO353_27375 0.36 +1.2 5,981,471 - AO353_27375 0.36 -2.0 5,981,471 - AO353_27375 0.36 +1.1 5,981,471 - AO353_27375 0.36 -0.4 5,981,676 + AO353_27375 0.75 -2.0 5,981,677 - AO353_27375 0.75 -1.2 5,981,810 + +1.0 5,981,810 + -0.5 5,981,811 - -0.3 5,981,811 - -0.3 5,981,811 - +0.2 5,981,811 - -1.1 5,981,811 - +0.5 5,981,939 + +0.5 5,982,229 + AO353_27380 0.86 -0.7 5,982,229 + AO353_27380 0.86 +0.2 5,982,230 - AO353_27380 0.86 -0.4 5,982,289 - -0.1 5,982,357 + -1.2 5,982,370 + -0.3 5,982,371 - -0.6 5,982,378 - -0.7 5,982,410 + -0.7 5,982,411 - +0.2 5,982,427 + +1.5 5,982,427 + +0.2 5,982,427 + -0.9 5,982,427 + -0.6 5,982,427 + -0.3 5,982,428 - -2.9 5,982,509 + -1.0 5,982,509 + +1.9 5,982,509 + +1.2 5,982,510 - -0.3 5,982,646 - -0.8 5,982,797 + +0.5 5,982,797 + +0.3
Or see this region's nucleotide sequence