Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27015 and AO353_27020 overlap by 46 nucleotides AO353_27020 and AO353_27025 are separated by 185 nucleotides AO353_27025 and AO353_27030 are separated by 431 nucleotides
AO353_27015: AO353_27015 - 6-O-methylguanine DNA methyltransferase, at 5,920,010 to 5,921,113
_27015
AO353_27020: AO353_27020 - transcriptional regulator, at 5,921,068 to 5,921,526
_27020
AO353_27025: AO353_27025 - 2-nitropropane dioxygenase, at 5,921,712 to 5,922,776
_27025
AO353_27030: AO353_27030 - molybdate ABC transporter substrate-binding protein, at 5,923,208 to 5,923,975
_27030
Position (kb) 5921
5922
5923 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5920.858 kb on + strand, within AO353_27015 at 5921.062 kb on + strand at 5921.063 kb on - strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.084 kb on + strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.085 kb on - strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.111 kb on + strand at 5921.112 kb on - strand at 5921.234 kb on + strand, within AO353_27020 at 5921.320 kb on + strand, within AO353_27020 at 5921.320 kb on + strand, within AO353_27020 at 5921.321 kb on - strand, within AO353_27020 at 5921.321 kb on - strand at 5921.321 kb on - strand, within AO353_27020 at 5921.333 kb on + strand, within AO353_27020 at 5921.333 kb on + strand, within AO353_27020 at 5921.334 kb on - strand, within AO353_27020 at 5921.342 kb on + strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.343 kb on - strand, within AO353_27020 at 5921.374 kb on - strand, within AO353_27020 at 5921.463 kb on + strand, within AO353_27020 at 5921.463 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.469 kb on + strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.470 kb on - strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.473 kb on + strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.474 kb on - strand, within AO353_27020 at 5921.488 kb on + strand at 5921.489 kb on - strand at 5921.612 kb on + strand at 5921.612 kb on + strand at 5921.613 kb on - strand at 5921.613 kb on - strand at 5921.643 kb on - strand at 5921.676 kb on + strand at 5921.676 kb on + strand at 5921.677 kb on - strand at 5921.677 kb on - strand at 5921.677 kb on - strand at 5921.696 kb on + strand at 5921.696 kb on + strand at 5922.000 kb on + strand at 5922.000 kb on + strand, within AO353_27025 at 5922.000 kb on + strand, within AO353_27025 at 5922.191 kb on + strand, within AO353_27025 at 5922.191 kb on + strand at 5922.191 kb on + strand, within AO353_27025 at 5922.192 kb on - strand, within AO353_27025 at 5922.192 kb on - strand, within AO353_27025 at 5922.192 kb on - strand, within AO353_27025 at 5922.192 kb on - strand, within AO353_27025 at 5922.192 kb on - strand, within AO353_27025 at 5922.253 kb on - strand, within AO353_27025 at 5922.311 kb on + strand, within AO353_27025 at 5922.352 kb on + strand, within AO353_27025 at 5922.445 kb on - strand, within AO353_27025 at 5922.445 kb on - strand, within AO353_27025 at 5922.531 kb on - strand, within AO353_27025 at 5922.848 kb on - strand at 5922.848 kb on - strand at 5922.848 kb on - strand at 5923.002 kb on + strand at 5923.010 kb on - strand at 5923.079 kb on + strand at 5923.080 kb on - strand at 5923.080 kb on - strand at 5923.086 kb on + strand at 5923.086 kb on + strand at 5923.087 kb on - strand at 5923.087 kb on - strand at 5923.112 kb on - strand at 5923.113 kb on + strand at 5923.113 kb on + strand at 5923.113 kb on + strand at 5923.114 kb on - strand at 5923.115 kb on + strand at 5923.115 kb on + strand at 5923.115 kb on + strand at 5923.115 kb on + strand at 5923.115 kb on + strand at 5923.115 kb on + strand at 5923.116 kb on - strand at 5923.123 kb on + strand at 5923.124 kb on - strand at 5923.124 kb on - strand at 5923.126 kb on - strand at 5923.127 kb on + strand at 5923.127 kb on + strand at 5923.128 kb on - strand at 5923.213 kb on + strand at 5923.213 kb on + strand at 5923.213 kb on + strand at 5923.213 kb on + strand at 5923.409 kb on + strand, within AO353_27030 at 5923.409 kb on + strand, within AO353_27030 at 5923.410 kb on - strand, within AO353_27030 at 5923.410 kb on - strand, within AO353_27030 at 5923.410 kb on - strand, within AO353_27030 at 5923.410 kb on - strand, within AO353_27030 at 5923.521 kb on - strand, within AO353_27030 at 5923.562 kb on + strand, within AO353_27030 at 5923.562 kb on + strand, within AO353_27030 at 5923.562 kb on + strand, within AO353_27030 at 5923.601 kb on + strand, within AO353_27030 at 5923.601 kb on + strand, within AO353_27030 at 5923.601 kb on + strand, within AO353_27030 at 5923.602 kb on - strand, within AO353_27030 at 5923.602 kb on - strand, within AO353_27030 at 5923.602 kb on - strand, within AO353_27030 at 5923.602 kb on - strand, within AO353_27030 at 5923.602 kb on - strand, within AO353_27030 at 5923.662 kb on + strand, within AO353_27030 at 5923.662 kb on + strand, within AO353_27030 at 5923.662 kb on + strand, within AO353_27030 at 5923.663 kb on - strand, within AO353_27030 at 5923.663 kb on - strand, within AO353_27030 at 5923.733 kb on + strand, within AO353_27030 at 5923.765 kb on - strand, within AO353_27030
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 5,920,858 + AO353_27015 0.77 -0.6 5,921,062 + +0.5 5,921,063 - +0.0 5,921,084 + +0.5 5,921,084 + -0.7 5,921,084 + -0.9 5,921,084 + -0.8 5,921,084 + +0.1 5,921,084 + +0.3 5,921,084 + +1.0 5,921,084 + +1.0 5,921,085 - -1.4 5,921,085 - +0.4 5,921,085 - +0.6 5,921,085 - -0.6 5,921,085 - +0.5 5,921,085 - -1.2 5,921,085 - -0.1 5,921,085 - -1.5 5,921,085 - +0.2 5,921,085 - +0.4 5,921,085 - -0.3 5,921,085 - -1.2 5,921,085 - -1.2 5,921,085 - +1.3 5,921,085 - +0.7 5,921,085 - -1.9 5,921,085 - +1.2 5,921,111 + -1.6 5,921,111 + -0.5 5,921,111 + +1.0 5,921,111 + -3.4 5,921,112 - +0.2 5,921,234 + AO353_27020 0.36 +0.5 5,921,320 + AO353_27020 0.55 -0.0 5,921,320 + AO353_27020 0.55 +0.2 5,921,321 - AO353_27020 0.55 -0.9 5,921,321 - -0.1 5,921,321 - AO353_27020 0.55 +0.4 5,921,333 + AO353_27020 0.58 -0.1 5,921,333 + AO353_27020 0.58 -0.1 5,921,334 - AO353_27020 0.58 +0.2 5,921,342 + AO353_27020 0.60 -0.4 5,921,343 - AO353_27020 0.60 -0.5 5,921,343 - AO353_27020 0.60 -0.8 5,921,343 - AO353_27020 0.60 +0.9 5,921,374 - AO353_27020 0.67 -0.9 5,921,463 + AO353_27020 0.86 -0.1 5,921,463 + AO353_27020 0.86 +0.5 5,921,469 + AO353_27020 0.87 +0.9 5,921,469 + AO353_27020 0.87 +0.5 5,921,469 + AO353_27020 0.87 +0.7 5,921,469 + AO353_27020 0.87 +1.6 5,921,469 + AO353_27020 0.87 +0.1 5,921,469 + AO353_27020 0.87 -1.3 5,921,469 + AO353_27020 0.87 +0.7 5,921,469 + AO353_27020 0.87 -0.1 5,921,470 - AO353_27020 0.88 +0.3 5,921,470 - AO353_27020 0.88 -1.2 5,921,470 - AO353_27020 0.88 -1.4 5,921,473 + AO353_27020 0.88 -0.0 5,921,473 + AO353_27020 0.88 +0.9 5,921,473 + AO353_27020 0.88 +0.5 5,921,473 + AO353_27020 0.88 -1.0 5,921,473 + AO353_27020 0.88 +0.3 5,921,473 + AO353_27020 0.88 -2.0 5,921,473 + AO353_27020 0.88 -0.9 5,921,474 - AO353_27020 0.88 -0.5 5,921,474 - AO353_27020 0.88 -0.1 5,921,474 - AO353_27020 0.88 -0.4 5,921,474 - AO353_27020 0.88 -0.0 5,921,474 - AO353_27020 0.88 +0.6 5,921,474 - AO353_27020 0.88 +0.6 5,921,488 + +0.6 5,921,489 - -0.0 5,921,612 + +0.6 5,921,612 + -0.1 5,921,613 - -1.6 5,921,613 - -0.3 5,921,643 - -0.8 5,921,676 + +1.5 5,921,676 + -0.8 5,921,677 - -0.8 5,921,677 - +0.5 5,921,677 - -0.5 5,921,696 + +0.1 5,921,696 + -0.5 5,922,000 + -0.5 5,922,000 + AO353_27025 0.27 +1.5 5,922,000 + AO353_27025 0.27 +0.2 5,922,191 + AO353_27025 0.45 +0.5 5,922,191 + -0.5 5,922,191 + AO353_27025 0.45 -0.1 5,922,192 - AO353_27025 0.45 +1.1 5,922,192 - AO353_27025 0.45 +2.2 5,922,192 - AO353_27025 0.45 +0.1 5,922,192 - AO353_27025 0.45 -0.7 5,922,192 - AO353_27025 0.45 +1.1 5,922,253 - AO353_27025 0.51 -0.1 5,922,311 + AO353_27025 0.56 +0.9 5,922,352 + AO353_27025 0.60 -0.1 5,922,445 - AO353_27025 0.69 +1.5 5,922,445 - AO353_27025 0.69 +0.1 5,922,531 - AO353_27025 0.77 +0.2 5,922,848 - -0.8 5,922,848 - -1.0 5,922,848 - +0.5 5,923,002 + +1.7 5,923,010 - -1.1 5,923,079 + -0.6 5,923,080 - -0.7 5,923,080 - -0.4 5,923,086 + -0.2 5,923,086 + +1.6 5,923,087 - +0.3 5,923,087 - +1.5 5,923,112 - +0.3 5,923,113 + +0.5 5,923,113 + -0.6 5,923,113 + -4.0 5,923,114 - -0.5 5,923,115 + -0.4 5,923,115 + -1.1 5,923,115 + +0.1 5,923,115 + -0.2 5,923,115 + +0.4 5,923,115 + -0.1 5,923,116 - +0.4 5,923,123 + -0.3 5,923,124 - +0.6 5,923,124 - -1.7 5,923,126 - -1.2 5,923,127 + +0.2 5,923,127 + -0.4 5,923,128 - +0.5 5,923,213 + +0.9 5,923,213 + +1.7 5,923,213 + -0.3 5,923,213 + -0.5 5,923,409 + AO353_27030 0.26 -0.3 5,923,409 + AO353_27030 0.26 +0.7 5,923,410 - AO353_27030 0.26 -1.1 5,923,410 - AO353_27030 0.26 -0.5 5,923,410 - AO353_27030 0.26 +0.2 5,923,410 - AO353_27030 0.26 -0.5 5,923,521 - AO353_27030 0.41 +0.0 5,923,562 + AO353_27030 0.46 -1.3 5,923,562 + AO353_27030 0.46 -1.1 5,923,562 + AO353_27030 0.46 -0.5 5,923,601 + AO353_27030 0.51 -0.5 5,923,601 + AO353_27030 0.51 +0.1 5,923,601 + AO353_27030 0.51 -0.7 5,923,602 - AO353_27030 0.51 -0.5 5,923,602 - AO353_27030 0.51 -1.1 5,923,602 - AO353_27030 0.51 -1.2 5,923,602 - AO353_27030 0.51 +0.1 5,923,602 - AO353_27030 0.51 +0.2 5,923,662 + AO353_27030 0.59 -2.5 5,923,662 + AO353_27030 0.59 -1.3 5,923,662 + AO353_27030 0.59 +0.1 5,923,663 - AO353_27030 0.59 -1.3 5,923,663 - AO353_27030 0.59 +0.5 5,923,733 + AO353_27030 0.68 -0.1 5,923,765 - AO353_27030 0.73 +0.5
Or see this region's nucleotide sequence