Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21715

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21710 and AO353_21715 are separated by 52 nucleotidesAO353_21715 and AO353_21720 are separated by 10 nucleotidesAO353_21720 and AO353_21725 overlap by 4 nucleotides AO353_21710: AO353_21710 - ABC transporter for D-glucosamine, periplasmic substrate-binding component (from data), at 4,760,486 to 4,761,334 _21710 AO353_21715: AO353_21715 - ABC transporter for D-glucosamine, permease component 1 (from data), at 4,761,387 to 4,762,049 _21715 AO353_21720: AO353_21720 - ABC transporter for D-glucosamine, permease component 2 (from data), at 4,762,060 to 4,762,722 _21720 AO353_21725: AO353_21725 - ABC transporter for D-glucosamine, ATPase component (from data), at 4,762,719 to 4,763,516 _21725 Position (kb) 4761 4762 4763Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4760.510 kb on - strandat 4760.510 kb on - strandat 4760.862 kb on - strand, within AO353_21710at 4760.903 kb on + strand, within AO353_21710at 4760.903 kb on + strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.904 kb on - strand, within AO353_21710at 4760.970 kb on - strand, within AO353_21710at 4761.021 kb on - strand, within AO353_21710at 4761.021 kb on - strand, within AO353_21710at 4761.021 kb on - strand, within AO353_21710at 4761.041 kb on + strand, within AO353_21710at 4761.042 kb on - strand, within AO353_21710at 4761.042 kb on - strand, within AO353_21710at 4761.042 kb on - strand, within AO353_21710at 4761.101 kb on + strand, within AO353_21710at 4761.101 kb on + strand, within AO353_21710at 4761.101 kb on + strand, within AO353_21710at 4761.101 kb on + strand, within AO353_21710at 4761.102 kb on - strand, within AO353_21710at 4761.102 kb on - strand, within AO353_21710at 4761.102 kb on - strand, within AO353_21710at 4761.143 kb on + strand, within AO353_21710at 4761.143 kb on + strand, within AO353_21710at 4761.143 kb on + strand, within AO353_21710at 4761.144 kb on - strand, within AO353_21710at 4761.144 kb on - strand, within AO353_21710at 4761.144 kb on - strand, within AO353_21710at 4761.144 kb on - strand, within AO353_21710at 4761.164 kb on + strand, within AO353_21710at 4761.164 kb on + strand, within AO353_21710at 4761.215 kb on - strand, within AO353_21710at 4761.258 kb on - strandat 4761.376 kb on + strandat 4761.376 kb on + strandat 4761.376 kb on + strandat 4761.377 kb on - strandat 4761.393 kb on + strandat 4761.393 kb on + strandat 4761.393 kb on + strandat 4761.394 kb on - strandat 4761.394 kb on - strandat 4761.394 kb on - strandat 4761.394 kb on - strandat 4761.394 kb on - strandat 4761.564 kb on + strand, within AO353_21715at 4761.564 kb on + strand, within AO353_21715at 4761.565 kb on - strand, within AO353_21715at 4761.565 kb on - strand, within AO353_21715at 4761.565 kb on - strand, within AO353_21715at 4761.565 kb on - strand, within AO353_21715at 4761.615 kb on + strand, within AO353_21715at 4761.615 kb on + strand, within AO353_21715at 4761.616 kb on - strand, within AO353_21715at 4761.616 kb on - strand, within AO353_21715at 4761.616 kb on - strand, within AO353_21715at 4761.684 kb on + strand, within AO353_21715at 4761.685 kb on - strand, within AO353_21715at 4761.685 kb on - strand, within AO353_21715at 4761.685 kb on - strand, within AO353_21715at 4761.685 kb on - strand, within AO353_21715at 4761.696 kb on + strand, within AO353_21715at 4761.697 kb on - strand, within AO353_21715at 4761.697 kb on - strand, within AO353_21715at 4761.795 kb on + strand, within AO353_21715at 4761.795 kb on + strand, within AO353_21715at 4761.795 kb on + strand, within AO353_21715at 4761.796 kb on - strand, within AO353_21715at 4761.796 kb on - strand, within AO353_21715at 4761.796 kb on - strand, within AO353_21715at 4761.796 kb on - strand, within AO353_21715at 4761.796 kb on - strand, within AO353_21715at 4761.909 kb on + strand, within AO353_21715at 4761.909 kb on + strand, within AO353_21715at 4761.909 kb on + strand, within AO353_21715at 4761.909 kb on + strand, within AO353_21715at 4761.909 kb on + strand, within AO353_21715at 4761.910 kb on - strand, within AO353_21715at 4761.910 kb on - strand, within AO353_21715at 4761.910 kb on - strand, within AO353_21715at 4761.912 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.978 kb on + strand, within AO353_21715at 4761.979 kb on - strand, within AO353_21715at 4761.994 kb on - strandat 4761.994 kb on - strandat 4762.018 kb on - strandat 4762.018 kb on - strandat 4762.063 kb on + strandat 4762.063 kb on + strandat 4762.064 kb on - strandat 4762.064 kb on - strandat 4762.064 kb on - strandat 4762.091 kb on + strandat 4762.092 kb on - strandat 4762.092 kb on - strandat 4762.092 kb on - strandat 4762.204 kb on + strand, within AO353_21720at 4762.205 kb on - strand, within AO353_21720at 4762.205 kb on - strand, within AO353_21720at 4762.205 kb on - strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on + strand, within AO353_21720at 4762.294 kb on - strand, within AO353_21720at 4762.295 kb on - strand, within AO353_21720at 4762.456 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.471 kb on + strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strand, within AO353_21720at 4762.472 kb on - strandat 4762.472 kb on - strand, within AO353_21720at 4762.633 kb on + strand, within AO353_21720at 4762.634 kb on - strand, within AO353_21720at 4762.669 kb on + strandat 4762.669 kb on + strandat 4762.669 kb on + strandat 4762.669 kb on + strandat 4762.669 kb on + strandat 4762.669 kb on + strandat 4762.670 kb on - strandat 4762.670 kb on - strandat 4762.670 kb on - strandat 4762.670 kb on - strandat 4762.670 kb on - strandat 4762.670 kb on - strandat 4762.695 kb on + strandat 4762.791 kb on + strandat 4762.791 kb on + strandat 4762.791 kb on + strandat 4762.792 kb on - strandat 4762.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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4,760,510 - -0.7
4,760,510 - -1.5
4,760,862 - AO353_21710 0.44 -2.3
4,760,903 + AO353_21710 0.49 -2.1
4,760,903 + AO353_21710 0.49 -1.4
4,760,904 - AO353_21710 0.49 -3.0
4,760,904 - AO353_21710 0.49 -2.8
4,760,904 - AO353_21710 0.49 -3.9
4,760,904 - AO353_21710 0.49 -2.2
4,760,904 - AO353_21710 0.49 -0.2
4,760,904 - AO353_21710 0.49 -2.2
4,760,904 - AO353_21710 0.49 -2.7
4,760,970 - AO353_21710 0.57 -2.0
4,761,021 - AO353_21710 0.63 -2.3
4,761,021 - AO353_21710 0.63 -3.7
4,761,021 - AO353_21710 0.63 -3.0
4,761,041 + AO353_21710 0.65 -1.9
4,761,042 - AO353_21710 0.65 -1.9
4,761,042 - AO353_21710 0.65 -1.4
4,761,042 - AO353_21710 0.65 -2.8
4,761,101 + AO353_21710 0.72 -4.2
4,761,101 + AO353_21710 0.72 -1.6
4,761,101 + AO353_21710 0.72 -2.7
4,761,101 + AO353_21710 0.72 -2.9
4,761,102 - AO353_21710 0.73 -0.2
4,761,102 - AO353_21710 0.73 -1.9
4,761,102 - AO353_21710 0.73 -3.6
4,761,143 + AO353_21710 0.77 -2.4
4,761,143 + AO353_21710 0.77 -2.7
4,761,143 + AO353_21710 0.77 -0.2
4,761,144 - AO353_21710 0.78 -3.4
4,761,144 - AO353_21710 0.78 -2.0
4,761,144 - AO353_21710 0.78 -1.9
4,761,144 - AO353_21710 0.78 -2.8
4,761,164 + AO353_21710 0.80 -4.1
4,761,164 + AO353_21710 0.80 -2.9
4,761,215 - AO353_21710 0.86 -1.9
4,761,258 - -4.2
4,761,376 + -2.1
4,761,376 + -1.7
4,761,376 + -2.9
4,761,377 - -4.0
4,761,393 + -2.6
4,761,393 + -1.1
4,761,393 + -1.5
4,761,394 - -2.6
4,761,394 - -2.3
4,761,394 - -1.4
4,761,394 - -1.7
4,761,394 - -2.3
4,761,564 + AO353_21715 0.27 -5.0
4,761,564 + AO353_21715 0.27 -1.9
4,761,565 - AO353_21715 0.27 -3.0
4,761,565 - AO353_21715 0.27 -2.0
4,761,565 - AO353_21715 0.27 -1.9
4,761,565 - AO353_21715 0.27 -0.1
4,761,615 + AO353_21715 0.34 -0.8
4,761,615 + AO353_21715 0.34 -1.4
4,761,616 - AO353_21715 0.35 -1.2
4,761,616 - AO353_21715 0.35 -3.9
4,761,616 - AO353_21715 0.35 -3.3
4,761,684 + AO353_21715 0.45 -1.4
4,761,685 - AO353_21715 0.45 -2.0
4,761,685 - AO353_21715 0.45 -3.2
4,761,685 - AO353_21715 0.45 -1.2
4,761,685 - AO353_21715 0.45 -1.9
4,761,696 + AO353_21715 0.47 -0.4
4,761,697 - AO353_21715 0.47 -1.6
4,761,697 - AO353_21715 0.47 +0.0
4,761,795 + AO353_21715 0.62 -1.0
4,761,795 + AO353_21715 0.62 -1.3
4,761,795 + AO353_21715 0.62 -0.6
4,761,796 - AO353_21715 0.62 -3.5
4,761,796 - AO353_21715 0.62 -2.4
4,761,796 - AO353_21715 0.62 -1.4
4,761,796 - AO353_21715 0.62 -3.1
4,761,796 - AO353_21715 0.62 -2.9
4,761,909 + AO353_21715 0.79 -3.3
4,761,909 + AO353_21715 0.79 -2.2
4,761,909 + AO353_21715 0.79 -0.9
4,761,909 + AO353_21715 0.79 -1.2
4,761,909 + AO353_21715 0.79 -2.2
4,761,910 - AO353_21715 0.79 -1.0
4,761,910 - AO353_21715 0.79 -3.1
4,761,910 - AO353_21715 0.79 -3.4
4,761,912 + AO353_21715 0.79 -1.3
4,761,978 + AO353_21715 0.89 -3.4
4,761,978 + AO353_21715 0.89 -1.7
4,761,978 + AO353_21715 0.89 -2.3
4,761,978 + AO353_21715 0.89 -2.4
4,761,978 + AO353_21715 0.89 -1.6
4,761,978 + AO353_21715 0.89 -4.4
4,761,978 + AO353_21715 0.89 -2.1
4,761,978 + AO353_21715 0.89 -2.1
4,761,978 + AO353_21715 0.89 -3.7
4,761,979 - AO353_21715 0.89 -3.2
4,761,994 - -1.4
4,761,994 - -3.5
4,762,018 - +0.6
4,762,018 - -1.7
4,762,063 + -2.9
4,762,063 + -2.0
4,762,064 - -3.5
4,762,064 - -4.7
4,762,064 - -2.3
4,762,091 + -2.7
4,762,092 - -1.4
4,762,092 - -2.4
4,762,092 - -0.7
4,762,204 + AO353_21720 0.22 -2.3
4,762,205 - AO353_21720 0.22 -2.3
4,762,205 - AO353_21720 0.22 -3.6
4,762,205 - AO353_21720 0.22 -2.7
4,762,294 + AO353_21720 0.35 -1.9
4,762,294 + AO353_21720 0.35 -3.2
4,762,294 + AO353_21720 0.35 -1.9
4,762,294 + AO353_21720 0.35 -2.0
4,762,294 + AO353_21720 0.35 -2.8
4,762,294 + AO353_21720 0.35 -1.7
4,762,294 + AO353_21720 0.35 -2.8
4,762,294 - AO353_21720 0.35 -1.6
4,762,295 - AO353_21720 0.35 -2.6
4,762,456 + AO353_21720 0.60 -2.0
4,762,471 + AO353_21720 0.62 -3.3
4,762,471 + AO353_21720 0.62 -1.4
4,762,471 + AO353_21720 0.62 -2.3
4,762,471 + AO353_21720 0.62 -3.4
4,762,471 + AO353_21720 0.62 -1.7
4,762,471 + AO353_21720 0.62 -1.0
4,762,471 + AO353_21720 0.62 -1.6
4,762,471 + AO353_21720 0.62 -3.2
4,762,471 + AO353_21720 0.62 +0.0
4,762,471 + AO353_21720 0.62 -1.2
4,762,471 + AO353_21720 0.62 -2.0
4,762,471 + AO353_21720 0.62 -1.4
4,762,471 + AO353_21720 0.62 -2.5
4,762,471 + AO353_21720 0.62 -4.5
4,762,471 + AO353_21720 0.62 -2.7
4,762,471 + AO353_21720 0.62 -2.6
4,762,471 + AO353_21720 0.62 -1.4
4,762,471 + AO353_21720 0.62 -2.8
4,762,471 + AO353_21720 0.62 -2.7
4,762,471 + AO353_21720 0.62 -2.3
4,762,471 + AO353_21720 0.62 -2.0
4,762,471 + AO353_21720 0.62 -3.3
4,762,471 + AO353_21720 0.62 -1.0
4,762,472 - AO353_21720 0.62 -1.4
4,762,472 - AO353_21720 0.62 -1.5
4,762,472 - AO353_21720 0.62 -1.7
4,762,472 - AO353_21720 0.62 -3.4
4,762,472 - AO353_21720 0.62 -2.6
4,762,472 - AO353_21720 0.62 -1.3
4,762,472 - AO353_21720 0.62 -2.0
4,762,472 - AO353_21720 0.62 -1.9
4,762,472 - AO353_21720 0.62 -1.6
4,762,472 - AO353_21720 0.62 -2.0
4,762,472 - AO353_21720 0.62 -1.9
4,762,472 - AO353_21720 0.62 -3.1
4,762,472 - AO353_21720 0.62 -2.6
4,762,472 - AO353_21720 0.62 -0.4
4,762,472 - +1.6
4,762,472 - AO353_21720 0.62 -1.9
4,762,633 + AO353_21720 0.86 -1.4
4,762,634 - AO353_21720 0.87 -3.2
4,762,669 + -2.0
4,762,669 + -3.7
4,762,669 + -2.8
4,762,669 + -3.0
4,762,669 + -2.9
4,762,669 + -2.6
4,762,670 - -2.4
4,762,670 - -2.2
4,762,670 - -1.6
4,762,670 - -2.1
4,762,670 - -3.6
4,762,670 - -0.7
4,762,695 + -2.4
4,762,791 + -2.9
4,762,791 + -2.0
4,762,791 + -3.0
4,762,792 - -1.4
4,762,792 - -2.8

Or see this region's nucleotide sequence