Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04405

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04400 and AO353_04405 are separated by 71 nucleotidesAO353_04405 and AO353_04410 are separated by 102 nucleotides AO353_04400: AO353_04400 - transporter, at 947,431 to 948,696 _04400 AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084 _04405 AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368 _04410 Position (kb) 948 949 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1at 947.816 kb on + strand, within AO353_04400at 947.817 kb on - strand, within AO353_04400at 947.822 kb on - strand, within AO353_04400at 948.156 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.232 kb on + strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.233 kb on - strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.319 kb on + strand, within AO353_04400at 948.320 kb on - strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.329 kb on + strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.330 kb on - strand, within AO353_04400at 948.647 kb on + strandat 948.648 kb on - strandat 948.695 kb on - strandat 948.695 kb on - strandat 948.695 kb on - strandat 948.724 kb on - strandat 948.726 kb on + strandat 948.726 kb on + strandat 948.726 kb on + strandat 948.726 kb on + strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.727 kb on - strandat 948.773 kb on + strandat 948.773 kb on + strandat 948.774 kb on - strandat 948.786 kb on + strandat 948.786 kb on + strandat 948.786 kb on + strandat 948.786 kb on + strandat 948.787 kb on - strandat 948.787 kb on - strandat 948.787 kb on - strandat 948.870 kb on + strandat 948.871 kb on - strandat 948.871 kb on - strandat 948.871 kb on - strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.879 kb on + strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.880 kb on - strandat 948.885 kb on + strandat 949.000 kb on + strand, within AO353_04405at 949.001 kb on - strand, within AO353_04405at 949.001 kb on - strand, within AO353_04405at 949.114 kb on - strand, within AO353_04405at 949.153 kb on + strand, within AO353_04405at 949.153 kb on + strand, within AO353_04405at 949.154 kb on - strand, within AO353_04405at 949.154 kb on - strand, within AO353_04405at 949.278 kb on - strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.404 kb on + strand, within AO353_04405at 949.405 kb on - strand, within AO353_04405at 949.501 kb on - strand, within AO353_04405at 949.558 kb on - strand, within AO353_04405at 949.558 kb on - strand, within AO353_04405at 949.558 kb on - strand, within AO353_04405at 949.584 kb on + strand, within AO353_04405at 949.584 kb on + strand, within AO353_04405at 949.584 kb on + strand, within AO353_04405at 949.585 kb on - strand, within AO353_04405at 949.585 kb on - strand, within AO353_04405at 949.585 kb on - strand, within AO353_04405at 949.606 kb on - strand, within AO353_04405at 949.606 kb on - strand, within AO353_04405at 949.890 kb on - strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.908 kb on + strand, within AO353_04405at 949.909 kb on - strand, within AO353_04405at 949.998 kb on + strandat 949.998 kb on + strandat 949.998 kb on + strandat 949.999 kb on - strandat 949.999 kb on - strandat 949.999 kb on - strandat 950.060 kb on + strandat 950.060 kb on + strandat 950.060 kb on + strandat 950.061 kb on - strandat 950.061 kb on - strandat 950.085 kb on + strandat 950.085 kb on + strandat 950.086 kb on - strandat 950.086 kb on - strandat 950.086 kb on - strandat 950.086 kb on - strandat 950.116 kb on - strandat 950.116 kb on - strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.121 kb on + strandat 950.122 kb on - strandat 950.122 kb on - strandat 950.122 kb on - strandat 950.122 kb on - strandat 950.122 kb on - strandat 950.160 kb on + strandat 950.161 kb on - strandat 950.188 kb on + strandat 950.188 kb on + strandat 950.188 kb on + strandat 950.188 kb on + strandat 950.188 kb on + strandat 950.189 kb on - strandat 950.196 kb on + strandat 950.196 kb on + strandat 950.196 kb on + strandat 950.196 kb on + strandat 950.196 kb on + strandat 950.197 kb on - strandat 950.197 kb on - strandat 950.197 kb on - strandat 950.778 kb on - strand, within AO353_04410at 950.861 kb on + strand, within AO353_04410at 950.961 kb on - strand, within AO353_04410at 950.975 kb on - strand, within AO353_04410

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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947,816 + AO353_04400 0.30 +0.1
947,817 - AO353_04400 0.30 -0.4
947,822 - AO353_04400 0.31 +0.2
948,156 + AO353_04400 0.57 -0.1
948,232 + AO353_04400 0.63 -0.1
948,232 + AO353_04400 0.63 -0.1
948,232 + AO353_04400 0.63 +0.3
948,232 + AO353_04400 0.63 +0.1
948,232 + AO353_04400 0.63 -0.1
948,232 + AO353_04400 0.63 +0.5
948,232 + AO353_04400 0.63 -0.2
948,233 - AO353_04400 0.63 -0.9
948,233 - AO353_04400 0.63 +0.5
948,233 - AO353_04400 0.63 +1.1
948,233 - AO353_04400 0.63 +0.3
948,233 - AO353_04400 0.63 -0.4
948,233 - AO353_04400 0.63 -0.5
948,233 - AO353_04400 0.63 -0.4
948,233 - AO353_04400 0.63 +0.4
948,233 - AO353_04400 0.63 -0.8
948,233 - AO353_04400 0.63 -0.0
948,233 - AO353_04400 0.63 +0.2
948,319 + AO353_04400 0.70 -0.2
948,319 + AO353_04400 0.70 -0.7
948,319 + AO353_04400 0.70 +0.0
948,320 - AO353_04400 0.70 -0.6
948,329 + AO353_04400 0.71 -0.6
948,329 + AO353_04400 0.71 -2.1
948,329 + AO353_04400 0.71 -1.4
948,330 - AO353_04400 0.71 -1.3
948,330 - AO353_04400 0.71 +0.7
948,330 - AO353_04400 0.71 -0.2
948,330 - AO353_04400 0.71 -0.2
948,330 - AO353_04400 0.71 -1.4
948,330 - AO353_04400 0.71 -1.3
948,647 + -0.4
948,648 - -3.1
948,695 - -0.8
948,695 - +1.1
948,695 - -0.8
948,724 - -0.8
948,726 + +0.1
948,726 + -0.9
948,726 + -0.6
948,726 + -0.2
948,727 - +0.4
948,727 - -0.4
948,727 - +0.8
948,727 - +0.3
948,727 - -0.1
948,727 - +0.4
948,773 + -0.9
948,773 + +0.9
948,774 - +0.6
948,786 + -0.2
948,786 + -1.1
948,786 + +1.7
948,786 + -1.2
948,787 - +0.5
948,787 - -0.7
948,787 - +1.0
948,870 + -0.0
948,871 - +0.6
948,871 - +1.3
948,871 - +0.1
948,879 + -0.5
948,879 + -0.9
948,879 + -1.9
948,879 + +1.3
948,879 + -1.3
948,879 + -0.3
948,879 + -0.8
948,879 + -0.6
948,879 + -0.0
948,880 - -0.6
948,880 - -0.2
948,880 - -2.5
948,880 - +0.2
948,880 - +0.0
948,880 - -0.5
948,880 - +0.1
948,880 - -0.2
948,880 - -0.6
948,880 - -0.5
948,885 + -1.6
949,000 + AO353_04405 0.18 +0.1
949,001 - AO353_04405 0.18 -2.0
949,001 - AO353_04405 0.18 -0.4
949,114 - AO353_04405 0.26 +0.7
949,153 + AO353_04405 0.29 +0.3
949,153 + AO353_04405 0.29 +0.2
949,154 - AO353_04405 0.29 +0.3
949,154 - AO353_04405 0.29 +0.3
949,278 - AO353_04405 0.39 +0.7
949,404 + AO353_04405 0.48 -0.1
949,404 + AO353_04405 0.48 -0.9
949,404 + AO353_04405 0.48 +0.4
949,404 + AO353_04405 0.48 -1.3
949,405 - AO353_04405 0.48 -0.5
949,501 - AO353_04405 0.56 -1.1
949,558 - AO353_04405 0.60 -0.1
949,558 - AO353_04405 0.60 -0.5
949,558 - AO353_04405 0.60 -1.9
949,584 + AO353_04405 0.62 -0.8
949,584 + AO353_04405 0.62 -2.1
949,584 + AO353_04405 0.62 -1.0
949,585 - AO353_04405 0.62 -0.3
949,585 - AO353_04405 0.62 -0.1
949,585 - AO353_04405 0.62 -0.2
949,606 - AO353_04405 0.64 -1.3
949,606 - AO353_04405 0.64 -0.0
949,890 - AO353_04405 0.85 -0.3
949,908 + AO353_04405 0.87 -2.0
949,908 + AO353_04405 0.87 -0.9
949,908 + AO353_04405 0.87 -0.8
949,908 + AO353_04405 0.87 -0.0
949,908 + AO353_04405 0.87 +0.2
949,908 + AO353_04405 0.87 +0.0
949,908 + AO353_04405 0.87 -1.8
949,909 - AO353_04405 0.87 -1.7
949,998 + -0.5
949,998 + -0.7
949,998 + +0.8
949,999 - +0.3
949,999 - -1.1
949,999 - -1.2
950,060 + +1.5
950,060 + -0.2
950,060 + -0.2
950,061 - -0.7
950,061 - -0.3
950,085 + -0.2
950,085 + -1.7
950,086 - +0.3
950,086 - +0.3
950,086 - -1.6
950,086 - -0.5
950,116 - +0.1
950,116 - +0.7
950,121 + -0.2
950,121 + +0.7
950,121 + +0.0
950,121 + +0.5
950,121 + -0.3
950,121 + +0.2
950,121 + -0.9
950,121 + -0.5
950,121 + -0.1
950,121 + +0.0
950,121 + +0.8
950,121 + +0.1
950,122 - +1.5
950,122 - +0.5
950,122 - +0.1
950,122 - -0.7
950,122 - +0.3
950,160 + +0.4
950,161 - -0.3
950,188 + +0.2
950,188 + -1.9
950,188 + +0.7
950,188 + -0.2
950,188 + -0.7
950,189 - +0.5
950,196 + +0.9
950,196 + -0.1
950,196 + -0.7
950,196 + +0.2
950,196 + +0.4
950,197 - -0.8
950,197 - +0.8
950,197 - -0.7
950,778 - AO353_04410 0.50 +0.1
950,861 + AO353_04410 0.57 -0.7
950,961 - AO353_04410 0.65 +0.7
950,975 - AO353_04410 0.67 -0.7

Or see this region's nucleotide sequence