Strain Fitness in Pantoea sp. MT58 around IAI47_20625

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20620 and IAI47_20625 are separated by 219 nucleotidesIAI47_20625 and IAI47_20630 are separated by 45 nucleotides IAI47_20620: IAI47_20620 - D-2-hydroxyacid dehydrogenase, at 374,390 to 375,343 _20620 IAI47_20625: IAI47_20625 - DUF2946 domain-containing protein, at 375,563 to 375,982 _20625 IAI47_20630: IAI47_20630 - DUF2534 family protein, at 376,028 to 377,758 _20630 Position (kb) 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 374.615 kb on + strand, within IAI47_20620at 374.669 kb on + strand, within IAI47_20620at 374.669 kb on + strand, within IAI47_20620at 374.677 kb on + strand, within IAI47_20620at 374.678 kb on - strand, within IAI47_20620at 374.755 kb on + strand, within IAI47_20620at 374.756 kb on - strand, within IAI47_20620at 374.756 kb on - strand, within IAI47_20620at 374.758 kb on + strand, within IAI47_20620at 374.759 kb on - strand, within IAI47_20620at 374.793 kb on + strand, within IAI47_20620at 374.793 kb on + strand, within IAI47_20620at 374.793 kb on + strand, within IAI47_20620at 374.794 kb on - strand, within IAI47_20620at 374.794 kb on - strand, within IAI47_20620at 374.794 kb on - strand, within IAI47_20620at 374.794 kb on - strand, within IAI47_20620at 374.794 kb on - strand, within IAI47_20620at 374.794 kb on - strand, within IAI47_20620at 374.821 kb on + strand, within IAI47_20620at 374.822 kb on - strand, within IAI47_20620at 374.858 kb on - strand, within IAI47_20620at 374.923 kb on + strand, within IAI47_20620at 374.923 kb on + strand, within IAI47_20620at 374.994 kb on + strand, within IAI47_20620at 374.995 kb on - strand, within IAI47_20620at 374.995 kb on - strand, within IAI47_20620at 375.064 kb on - strand, within IAI47_20620at 375.064 kb on - strand, within IAI47_20620at 375.076 kb on + strand, within IAI47_20620at 375.076 kb on + strand, within IAI47_20620at 375.076 kb on + strand, within IAI47_20620at 375.077 kb on - strand, within IAI47_20620at 375.077 kb on - strand, within IAI47_20620at 375.077 kb on - strand, within IAI47_20620at 375.077 kb on - strand, within IAI47_20620at 375.097 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.118 kb on + strand, within IAI47_20620at 375.119 kb on - strand, within IAI47_20620at 375.119 kb on - strand, within IAI47_20620at 375.148 kb on + strand, within IAI47_20620at 375.148 kb on + strand, within IAI47_20620at 375.148 kb on + strand, within IAI47_20620at 375.148 kb on + strand, within IAI47_20620at 375.149 kb on - strand, within IAI47_20620at 375.149 kb on - strand, within IAI47_20620at 375.149 kb on - strand, within IAI47_20620at 375.164 kb on + strand, within IAI47_20620at 375.173 kb on + strand, within IAI47_20620at 375.173 kb on + strand, within IAI47_20620at 375.174 kb on - strand, within IAI47_20620at 375.174 kb on - strand, within IAI47_20620at 375.199 kb on + strand, within IAI47_20620at 375.199 kb on + strand, within IAI47_20620at 375.200 kb on - strand, within IAI47_20620at 375.347 kb on + strandat 375.347 kb on + strandat 375.348 kb on - strandat 375.355 kb on + strandat 375.355 kb on + strandat 375.369 kb on - strandat 375.393 kb on - strandat 375.399 kb on - strandat 375.421 kb on - strandat 375.450 kb on + strandat 375.450 kb on + strandat 375.450 kb on + strandat 375.450 kb on + strandat 375.451 kb on - strandat 375.451 kb on - strandat 375.492 kb on + strandat 375.492 kb on + strandat 375.492 kb on + strandat 375.492 kb on + strandat 375.493 kb on - strandat 375.519 kb on + strandat 375.520 kb on - strandat 375.537 kb on + strandat 375.556 kb on + strandat 375.819 kb on + strand, within IAI47_20625at 375.820 kb on - strand, within IAI47_20625at 375.820 kb on - strand, within IAI47_20625at 375.820 kb on - strand, within IAI47_20625at 375.829 kb on + strand, within IAI47_20625at 375.829 kb on + strand, within IAI47_20625at 375.830 kb on - strand, within IAI47_20625at 375.858 kb on + strand, within IAI47_20625at 375.858 kb on + strand, within IAI47_20625at 375.858 kb on + strand, within IAI47_20625at 375.909 kb on + strand, within IAI47_20625at 375.963 kb on + strandat 375.964 kb on - strandat 376.027 kb on + strandat 376.027 kb on + strandat 376.027 kb on + strandat 376.027 kb on + strandat 376.027 kb on + strandat 376.028 kb on - strandat 376.028 kb on - strandat 376.028 kb on - strandat 376.028 kb on - strandat 376.076 kb on - strandat 376.100 kb on + strandat 376.102 kb on + strandat 376.103 kb on - strandat 376.115 kb on - strandat 376.157 kb on + strandat 376.157 kb on + strandat 376.157 kb on + strandat 376.157 kb on + strandat 376.157 kb on + strandat 376.158 kb on - strandat 376.158 kb on - strandat 376.165 kb on + strandat 376.165 kb on + strandat 376.165 kb on + strandat 376.166 kb on - strandat 376.190 kb on + strandat 376.289 kb on + strand, within IAI47_20630at 376.289 kb on + strand, within IAI47_20630at 376.290 kb on - strand, within IAI47_20630at 376.381 kb on + strand, within IAI47_20630at 376.392 kb on - strand, within IAI47_20630at 376.392 kb on - strand, within IAI47_20630at 376.392 kb on - strand, within IAI47_20630at 376.424 kb on + strand, within IAI47_20630at 376.425 kb on - strand, within IAI47_20630at 376.508 kb on + strand, within IAI47_20630at 376.508 kb on + strand, within IAI47_20630at 376.509 kb on - strand, within IAI47_20630at 376.509 kb on - strand, within IAI47_20630at 376.563 kb on + strand, within IAI47_20630at 376.564 kb on - strand, within IAI47_20630at 376.594 kb on + strand, within IAI47_20630at 376.594 kb on + strand, within IAI47_20630at 376.726 kb on + strand, within IAI47_20630at 376.726 kb on + strand, within IAI47_20630at 376.726 kb on + strand, within IAI47_20630at 376.727 kb on - strand, within IAI47_20630at 376.727 kb on - strand, within IAI47_20630at 376.727 kb on - strand, within IAI47_20630at 376.783 kb on + strand, within IAI47_20630at 376.783 kb on + strand, within IAI47_20630at 376.784 kb on - strand, within IAI47_20630at 376.981 kb on + strand, within IAI47_20630at 376.982 kb on - strand, within IAI47_20630at 376.982 kb on - strand, within IAI47_20630

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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374,615 + IAI47_20620 0.24 -1.2
374,669 + IAI47_20620 0.29 +0.1
374,669 + IAI47_20620 0.29 -0.7
374,677 + IAI47_20620 0.30 -0.2
374,678 - IAI47_20620 0.30 +1.3
374,755 + IAI47_20620 0.38 +0.0
374,756 - IAI47_20620 0.38 -0.7
374,756 - IAI47_20620 0.38 +0.1
374,758 + IAI47_20620 0.39 +1.0
374,759 - IAI47_20620 0.39 +0.5
374,793 + IAI47_20620 0.42 +1.3
374,793 + IAI47_20620 0.42 +0.5
374,793 + IAI47_20620 0.42 +0.6
374,794 - IAI47_20620 0.42 -0.1
374,794 - IAI47_20620 0.42 +1.6
374,794 - IAI47_20620 0.42 +0.4
374,794 - IAI47_20620 0.42 -0.1
374,794 - IAI47_20620 0.42 -2.3
374,794 - IAI47_20620 0.42 +0.2
374,821 + IAI47_20620 0.45 -1.3
374,822 - IAI47_20620 0.45 +2.3
374,858 - IAI47_20620 0.49 +2.3
374,923 + IAI47_20620 0.56 -2.9
374,923 + IAI47_20620 0.56 +1.9
374,994 + IAI47_20620 0.63 +0.0
374,995 - IAI47_20620 0.63 -2.2
374,995 - IAI47_20620 0.63 -0.0
375,064 - IAI47_20620 0.71 -1.1
375,064 - IAI47_20620 0.71 +0.7
375,076 + IAI47_20620 0.72 +0.6
375,076 + IAI47_20620 0.72 -1.6
375,076 + IAI47_20620 0.72 -0.9
375,077 - IAI47_20620 0.72 +1.4
375,077 - IAI47_20620 0.72 +1.7
375,077 - IAI47_20620 0.72 +1.6
375,077 - IAI47_20620 0.72 +1.7
375,097 + IAI47_20620 0.74 +3.6
375,118 + IAI47_20620 0.76 -0.9
375,118 + IAI47_20620 0.76 +0.7
375,118 + IAI47_20620 0.76 -2.8
375,118 + IAI47_20620 0.76 -0.3
375,118 + IAI47_20620 0.76 -2.2
375,118 + IAI47_20620 0.76 +0.4
375,118 + IAI47_20620 0.76 -2.7
375,118 + IAI47_20620 0.76 +0.7
375,119 - IAI47_20620 0.76 -0.6
375,119 - IAI47_20620 0.76 -0.4
375,148 + IAI47_20620 0.79 +1.0
375,148 + IAI47_20620 0.79 -0.1
375,148 + IAI47_20620 0.79 +0.4
375,148 + IAI47_20620 0.79 +0.7
375,149 - IAI47_20620 0.80 +1.3
375,149 - IAI47_20620 0.80 -3.1
375,149 - IAI47_20620 0.80 -1.1
375,164 + IAI47_20620 0.81 -0.7
375,173 + IAI47_20620 0.82 -0.6
375,173 + IAI47_20620 0.82 -0.0
375,174 - IAI47_20620 0.82 -0.6
375,174 - IAI47_20620 0.82 -1.9
375,199 + IAI47_20620 0.85 +0.3
375,199 + IAI47_20620 0.85 +1.6
375,200 - IAI47_20620 0.85 +0.5
375,347 + +0.5
375,347 + +0.4
375,348 - -0.0
375,355 + +0.9
375,355 + -0.1
375,369 - -1.3
375,393 - -0.6
375,399 - +2.5
375,421 - +0.8
375,450 + -1.6
375,450 + +2.6
375,450 + +1.9
375,450 + +0.3
375,451 - -0.5
375,451 - -1.3
375,492 + +0.3
375,492 + +1.3
375,492 + +1.3
375,492 + +2.8
375,493 - +0.6
375,519 + +1.4
375,520 - -0.2
375,537 + -2.7
375,556 + +1.3
375,819 + IAI47_20625 0.61 +1.7
375,820 - IAI47_20625 0.61 +3.0
375,820 - IAI47_20625 0.61 -0.3
375,820 - IAI47_20625 0.61 -1.1
375,829 + IAI47_20625 0.63 +1.7
375,829 + IAI47_20625 0.63 +1.1
375,830 - IAI47_20625 0.64 +1.7
375,858 + IAI47_20625 0.70 -3.1
375,858 + IAI47_20625 0.70 +0.8
375,858 + IAI47_20625 0.70 -0.3
375,909 + IAI47_20625 0.82 +3.0
375,963 + +0.1
375,964 - +3.6
376,027 + +1.7
376,027 + +4.3
376,027 + +1.7
376,027 + +2.0
376,027 + +2.3
376,028 - +1.5
376,028 - +2.3
376,028 - -0.3
376,028 - +1.0
376,076 - -0.1
376,100 + +2.3
376,102 + +1.0
376,103 - +0.8
376,115 - +0.7
376,157 + -1.3
376,157 + -1.3
376,157 + +0.8
376,157 + -1.0
376,157 + +2.8
376,158 - +1.3
376,158 - +1.0
376,165 + +1.6
376,165 + +0.3
376,165 + +0.3
376,166 - +0.9
376,190 + +2.3
376,289 + IAI47_20630 0.15 +0.4
376,289 + IAI47_20630 0.15 +3.8
376,290 - IAI47_20630 0.15 +0.3
376,381 + IAI47_20630 0.20 +2.5
376,392 - IAI47_20630 0.21 +0.3
376,392 - IAI47_20630 0.21 -1.6
376,392 - IAI47_20630 0.21 +0.7
376,424 + IAI47_20630 0.23 +0.3
376,425 - IAI47_20630 0.23 +1.1
376,508 + IAI47_20630 0.28 +2.8
376,508 + IAI47_20630 0.28 +3.2
376,509 - IAI47_20630 0.28 +1.1
376,509 - IAI47_20630 0.28 +1.5
376,563 + IAI47_20630 0.31 +0.9
376,564 - IAI47_20630 0.31 -1.1
376,594 + IAI47_20630 0.33 +2.3
376,594 + IAI47_20630 0.33 +1.3
376,726 + IAI47_20630 0.40 +2.3
376,726 + IAI47_20630 0.40 +1.5
376,726 + IAI47_20630 0.40 +2.3
376,727 - IAI47_20630 0.40 +3.1
376,727 - IAI47_20630 0.40 +2.4
376,727 - IAI47_20630 0.40 +2.4
376,783 + IAI47_20630 0.44 +0.8
376,783 + IAI47_20630 0.44 +0.3
376,784 - IAI47_20630 0.44 -0.1
376,981 + IAI47_20630 0.55 +0.3
376,982 - IAI47_20630 0.55 +2.8
376,982 - IAI47_20630 0.55 +2.7

Or see this region's nucleotide sequence