Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19530 and IAI47_19535 overlap by 35 nucleotides IAI47_19535 and IAI47_19540 are separated by 380 nucleotides
IAI47_19530: IAI47_19530 - hypothetical protein, at 136,066 to 136,263
_19530
IAI47_19535: IAI47_19535 - DUF4113 domain-containing protein, at 136,229 to 136,480
_19535
IAI47_19540: IAI47_19540 - nitroreductase family protein, at 136,861 to 137,601
_19540
Position (kb) 136
137 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 135.108 kb on + strand at 135.298 kb on + strand at 135.314 kb on + strand at 135.314 kb on + strand at 135.317 kb on + strand at 135.317 kb on + strand at 135.337 kb on + strand at 135.338 kb on - strand at 135.338 kb on - strand at 135.427 kb on + strand at 135.427 kb on + strand at 135.427 kb on + strand at 135.427 kb on + strand at 135.428 kb on - strand at 135.428 kb on - strand at 135.428 kb on - strand at 135.428 kb on - strand at 135.434 kb on + strand at 135.434 kb on + strand at 135.435 kb on - strand at 135.435 kb on - strand at 135.435 kb on - strand at 135.455 kb on + strand at 135.489 kb on + strand at 135.490 kb on - strand at 135.490 kb on - strand at 135.535 kb on + strand at 135.536 kb on - strand at 135.546 kb on + strand at 135.567 kb on - strand at 135.567 kb on - strand at 135.605 kb on - strand at 135.610 kb on - strand at 135.639 kb on + strand at 135.640 kb on - strand at 135.647 kb on + strand at 135.648 kb on - strand at 135.650 kb on + strand at 135.667 kb on + strand at 135.672 kb on - strand at 135.672 kb on - strand at 135.672 kb on - strand at 135.687 kb on + strand at 135.688 kb on - strand at 135.688 kb on - strand at 135.688 kb on - strand at 135.692 kb on - strand at 135.718 kb on + strand at 135.718 kb on + strand at 135.718 kb on + strand at 135.719 kb on - strand at 135.719 kb on - strand at 135.719 kb on - strand at 135.723 kb on + strand at 135.723 kb on + strand at 135.723 kb on + strand at 135.724 kb on - strand at 135.724 kb on - strand at 135.724 kb on - strand at 135.779 kb on + strand at 135.780 kb on - strand at 135.807 kb on + strand at 135.807 kb on + strand at 135.807 kb on + strand at 135.808 kb on - strand at 135.808 kb on - strand at 135.808 kb on - strand at 135.808 kb on - strand at 135.824 kb on - strand at 135.824 kb on - strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.835 kb on + strand at 135.836 kb on - strand at 135.836 kb on - strand at 135.841 kb on + strand at 135.841 kb on + strand at 135.842 kb on - strand at 135.842 kb on - strand at 135.842 kb on - strand at 135.842 kb on - strand at 135.851 kb on - strand at 135.861 kb on - strand at 135.914 kb on - strand at 135.914 kb on - strand at 135.924 kb on + strand at 135.924 kb on + strand at 135.924 kb on + strand at 135.977 kb on + strand at 135.977 kb on + strand at 135.978 kb on - strand at 135.990 kb on + strand at 135.990 kb on + strand at 135.991 kb on - strand at 136.025 kb on + strand at 136.047 kb on - strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.062 kb on + strand at 136.063 kb on - strand at 136.063 kb on - strand at 136.079 kb on - strand at 136.079 kb on - strand at 136.079 kb on - strand at 136.157 kb on + strand, within IAI47_19530 at 136.158 kb on - strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.186 kb on + strand, within IAI47_19530 at 136.187 kb on - strand, within IAI47_19530 at 136.187 kb on - strand, within IAI47_19530 at 136.194 kb on + strand, within IAI47_19530 at 136.194 kb on + strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.195 kb on - strand, within IAI47_19530 at 136.206 kb on + strand, within IAI47_19530 at 136.207 kb on - strand, within IAI47_19530 at 136.207 kb on - strand, within IAI47_19530 at 136.237 kb on + strand at 136.237 kb on + strand at 136.237 kb on + strand at 136.237 kb on + strand at 136.237 kb on + strand at 136.290 kb on + strand, within IAI47_19535 at 136.290 kb on + strand, within IAI47_19535 at 136.290 kb on + strand, within IAI47_19535 at 136.290 kb on + strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.291 kb on - strand, within IAI47_19535 at 136.307 kb on + strand, within IAI47_19535 at 136.307 kb on + strand, within IAI47_19535 at 136.429 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.445 kb on + strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.446 kb on - strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.447 kb on + strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.448 kb on - strand, within IAI47_19535 at 136.485 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.518 kb on + strand at 136.519 kb on - strand at 136.519 kb on - strand at 136.525 kb on + strand at 136.525 kb on + strand at 136.526 kb on - strand at 136.526 kb on - strand at 136.526 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.531 kb on - strand at 136.533 kb on + strand at 136.534 kb on - strand at 136.605 kb on + strand at 136.605 kb on + strand at 136.605 kb on + strand at 136.641 kb on + strand at 136.669 kb on - strand at 136.695 kb on + strand at 136.695 kb on + strand at 136.699 kb on + strand at 136.699 kb on + strand at 136.699 kb on + strand at 136.699 kb on + strand at 136.700 kb on - strand at 136.700 kb on - strand at 136.706 kb on + strand at 136.707 kb on - strand at 136.707 kb on - strand at 136.713 kb on + strand at 136.713 kb on + strand at 136.748 kb on + strand at 136.748 kb on + strand at 136.749 kb on - strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.752 kb on + strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.753 kb on - strand at 136.760 kb on + strand at 136.760 kb on + strand at 136.760 kb on + strand at 136.760 kb on + strand at 136.761 kb on - strand at 136.761 kb on - strand at 136.818 kb on + strand at 136.819 kb on - strand at 136.819 kb on - strand at 136.833 kb on + strand at 136.833 kb on + strand at 136.833 kb on + strand at 136.834 kb on - strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.835 kb on + strand at 136.836 kb on - strand at 136.836 kb on - strand at 136.836 kb on - strand at 136.847 kb on - strand at 136.847 kb on - strand at 136.847 kb on - strand at 136.849 kb on - strand at 136.849 kb on - strand at 136.879 kb on - strand at 136.885 kb on - strand at 136.937 kb on + strand, within IAI47_19540 at 136.947 kb on + strand, within IAI47_19540 at 136.947 kb on + strand, within IAI47_19540 at 136.949 kb on + strand, within IAI47_19540 at 136.950 kb on - strand, within IAI47_19540 at 136.950 kb on - strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.953 kb on + strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 136.954 kb on - strand, within IAI47_19540 at 137.089 kb on - strand, within IAI47_19540 at 137.106 kb on + strand, within IAI47_19540 at 137.106 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.112 kb on + strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.113 kb on - strand, within IAI47_19540 at 137.166 kb on + strand, within IAI47_19540 at 137.166 kb on + strand, within IAI47_19540 at 137.167 kb on - strand, within IAI47_19540 at 137.167 kb on - strand, within IAI47_19540 at 137.176 kb on - strand, within IAI47_19540
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 135,108 + +2.9 135,298 + +0.2 135,314 + +0.8 135,314 + +1.6 135,317 + +1.4 135,317 + -1.4 135,337 + +1.1 135,338 - -1.4 135,338 - +0.4 135,427 + +1.2 135,427 + +0.2 135,427 + -2.1 135,427 + +1.6 135,428 - +0.4 135,428 - +2.6 135,428 - +0.2 135,428 - -0.8 135,434 + -1.2 135,434 + -1.0 135,435 - -0.1 135,435 - -0.1 135,435 - +1.0 135,455 + -1.2 135,489 + -2.4 135,490 - -0.5 135,490 - -1.7 135,535 + +0.4 135,536 - -0.0 135,546 + -0.1 135,567 - -0.4 135,567 - -1.1 135,605 - -1.4 135,610 - +0.5 135,639 + +2.5 135,640 - -2.3 135,647 + +1.8 135,648 - +1.0 135,650 + +0.4 135,667 + -4.1 135,672 - -1.8 135,672 - +2.8 135,672 - +1.0 135,687 + +0.2 135,688 - -0.4 135,688 - -0.5 135,688 - +1.6 135,692 - -2.4 135,718 + +2.2 135,718 + +0.9 135,718 + +0.2 135,719 - -2.0 135,719 - -2.0 135,719 - +0.1 135,723 + +1.7 135,723 + -1.4 135,723 + +1.8 135,724 - +0.6 135,724 - +1.5 135,724 - +3.4 135,779 + +2.8 135,780 - +0.8 135,807 + +1.1 135,807 + +0.7 135,807 + -1.5 135,808 - -1.7 135,808 - +0.5 135,808 - +0.2 135,808 - -0.3 135,824 - +2.5 135,824 - +2.5 135,835 + +1.1 135,835 + +0.7 135,835 + -2.8 135,835 + -0.5 135,835 + +0.3 135,836 - -0.4 135,836 - +1.2 135,841 + +0.4 135,841 + +1.2 135,842 - +0.9 135,842 - +0.5 135,842 - +1.2 135,842 - +1.2 135,851 - -0.7 135,861 - -2.1 135,914 - +0.5 135,914 - +1.4 135,924 + -1.8 135,924 + -1.1 135,924 + -1.4 135,977 + +1.2 135,977 + +0.1 135,978 - +3.2 135,990 + +1.2 135,990 + -0.1 135,991 - -0.3 136,025 + -1.0 136,047 - +1.7 136,062 + +0.2 136,062 + +3.2 136,062 + -1.1 136,062 + +1.5 136,062 + +1.8 136,063 - +0.6 136,063 - +0.2 136,079 - -0.8 136,079 - +0.0 136,079 - +1.5 136,157 + IAI47_19530 0.46 +0.5 136,158 - IAI47_19530 0.46 +0.4 136,186 + IAI47_19530 0.61 +2.2 136,186 + IAI47_19530 0.61 +2.0 136,186 + IAI47_19530 0.61 +2.0 136,186 + IAI47_19530 0.61 +0.6 136,186 + IAI47_19530 0.61 -0.5 136,186 + IAI47_19530 0.61 +0.2 136,187 - IAI47_19530 0.61 -0.8 136,187 - IAI47_19530 0.61 +1.5 136,194 + IAI47_19530 0.65 +1.5 136,194 + IAI47_19530 0.65 -0.3 136,195 - IAI47_19530 0.65 -2.5 136,195 - IAI47_19530 0.65 -0.1 136,195 - IAI47_19530 0.65 +1.2 136,195 - IAI47_19530 0.65 -0.1 136,195 - IAI47_19530 0.65 +0.0 136,195 - IAI47_19530 0.65 -0.3 136,206 + IAI47_19530 0.71 +1.2 136,207 - IAI47_19530 0.71 -0.4 136,207 - IAI47_19530 0.71 +2.0 136,237 + +0.2 136,237 + -1.6 136,237 + +1.7 136,237 + +0.1 136,237 + -2.1 136,290 + IAI47_19535 0.24 +1.2 136,290 + IAI47_19535 0.24 -0.4 136,290 + IAI47_19535 0.24 -0.1 136,290 + IAI47_19535 0.24 -0.8 136,291 - IAI47_19535 0.25 -1.1 136,291 - IAI47_19535 0.25 +2.7 136,291 - IAI47_19535 0.25 -0.7 136,291 - IAI47_19535 0.25 +3.6 136,291 - IAI47_19535 0.25 -1.4 136,291 - IAI47_19535 0.25 +1.0 136,307 + IAI47_19535 0.31 +0.1 136,307 + IAI47_19535 0.31 +2.4 136,429 + IAI47_19535 0.79 +1.6 136,445 + IAI47_19535 0.86 -0.8 136,445 + IAI47_19535 0.86 -1.1 136,445 + IAI47_19535 0.86 -2.0 136,445 + IAI47_19535 0.86 -1.2 136,446 - IAI47_19535 0.86 -2.4 136,446 - IAI47_19535 0.86 +1.8 136,446 - IAI47_19535 0.86 +0.2 136,446 - IAI47_19535 0.86 -2.7 136,446 - IAI47_19535 0.86 +0.1 136,446 - IAI47_19535 0.86 -2.2 136,446 - IAI47_19535 0.86 +2.5 136,446 - IAI47_19535 0.86 -0.4 136,447 + IAI47_19535 0.87 -0.4 136,447 + IAI47_19535 0.87 +1.0 136,447 + IAI47_19535 0.87 +0.4 136,447 + IAI47_19535 0.87 +0.7 136,447 + IAI47_19535 0.87 -1.1 136,447 + IAI47_19535 0.87 +1.7 136,448 - IAI47_19535 0.87 -3.1 136,448 - IAI47_19535 0.87 -0.0 136,448 - IAI47_19535 0.87 -0.6 136,448 - IAI47_19535 0.87 +1.2 136,448 - IAI47_19535 0.87 -0.2 136,448 - IAI47_19535 0.87 -1.5 136,448 - IAI47_19535 0.87 -0.5 136,448 - IAI47_19535 0.87 +1.7 136,448 - IAI47_19535 0.87 -0.0 136,485 + +1.1 136,518 + +0.0 136,518 + +2.4 136,518 + +1.4 136,518 + -2.4 136,518 + +3.8 136,518 + +0.6 136,519 - +0.4 136,519 - -1.4 136,525 + +0.9 136,525 + -0.4 136,526 - -0.8 136,526 - +1.7 136,526 - +1.6 136,531 - -0.4 136,531 - +1.1 136,531 - +2.4 136,531 - -0.9 136,531 - +1.2 136,533 + +0.9 136,534 - +3.2 136,605 + -0.8 136,605 + +0.4 136,605 + +0.0 136,641 + -3.0 136,669 - -0.1 136,695 + -1.6 136,695 + -0.0 136,699 + -0.5 136,699 + +0.8 136,699 + +0.8 136,699 + +1.4 136,700 - -1.9 136,700 - -0.1 136,706 + +0.9 136,707 - +1.2 136,707 - +0.3 136,713 + -0.0 136,713 + -1.6 136,748 + +3.4 136,748 + +1.8 136,749 - -1.8 136,752 + -0.4 136,752 + +2.0 136,752 + +1.9 136,752 + +0.9 136,752 + +1.1 136,752 + -0.8 136,752 + +0.2 136,752 + -0.6 136,753 - +1.4 136,753 - +1.8 136,753 - -1.2 136,753 - -2.0 136,753 - +1.4 136,753 - -0.4 136,753 - +0.2 136,760 + -2.4 136,760 + +0.5 136,760 + +1.2 136,760 + +1.0 136,761 - +0.2 136,761 - -0.1 136,818 + -2.4 136,819 - +1.0 136,819 - +1.1 136,833 + -0.0 136,833 + +0.4 136,833 + -2.6 136,834 - +0.1 136,835 + -0.0 136,835 + +2.0 136,835 + +1.8 136,835 + +0.5 136,836 - -1.4 136,836 - -1.4 136,836 - +1.2 136,847 - +1.5 136,847 - +0.0 136,847 - -0.8 136,849 - +0.0 136,849 - -0.1 136,879 - -1.8 136,885 - -1.8 136,937 + IAI47_19540 0.10 -0.7 136,947 + IAI47_19540 0.12 -1.0 136,947 + IAI47_19540 0.12 -0.1 136,949 + IAI47_19540 0.12 -1.4 136,950 - IAI47_19540 0.12 -0.4 136,950 - IAI47_19540 0.12 +0.9 136,953 + IAI47_19540 0.12 -0.4 136,953 + IAI47_19540 0.12 +1.0 136,953 + IAI47_19540 0.12 +2.2 136,953 + IAI47_19540 0.12 +2.1 136,953 + IAI47_19540 0.12 -1.4 136,954 - IAI47_19540 0.13 +0.2 136,954 - IAI47_19540 0.13 +0.4 136,954 - IAI47_19540 0.13 +0.2 136,954 - IAI47_19540 0.13 -3.6 137,089 - IAI47_19540 0.31 -0.2 137,106 + IAI47_19540 0.33 -2.3 137,106 + IAI47_19540 0.33 +1.8 137,112 + IAI47_19540 0.34 +1.2 137,112 + IAI47_19540 0.34 -0.8 137,112 + IAI47_19540 0.34 +0.4 137,112 + IAI47_19540 0.34 +1.2 137,112 + IAI47_19540 0.34 -0.2 137,113 - IAI47_19540 0.34 +1.8 137,113 - IAI47_19540 0.34 -1.2 137,113 - IAI47_19540 0.34 +0.9 137,113 - IAI47_19540 0.34 -2.0 137,113 - IAI47_19540 0.34 +1.2 137,113 - IAI47_19540 0.34 -1.5 137,166 + IAI47_19540 0.41 -1.6 137,166 + IAI47_19540 0.41 +0.8 137,167 - IAI47_19540 0.41 +0.6 137,167 - IAI47_19540 0.41 +2.2 137,176 - IAI47_19540 0.43 -0.5
Or see this region's nucleotide sequence