Strain Fitness in Pantoea sp. MT58 around IAI47_07835

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,658,807	+		IAI47_07830	0.11	-2.7
1,658,860	-		IAI47_07830	0.16	-2.2
1,659,093	+		IAI47_07830	0.40	-0.4
1,659,093	+		IAI47_07830	0.40	-2.8
1,659,093	+		IAI47_07830	0.40	+1.6
1,659,093	+		IAI47_07830	0.40	+0.1
1,659,094	-		IAI47_07830	0.40	+0.7
1,659,094	-		IAI47_07830	0.40	+1.5
1,659,094	-		IAI47_07830	0.40	-0.1
1,659,094	-		IAI47_07830	0.40	+0.6
1,659,094	-		IAI47_07830	0.40	-1.0
1,659,112	+		IAI47_07830	0.42	+2.0
1,659,113	-		IAI47_07830	0.42	+0.7
1,659,113	-		IAI47_07830	0.42	-0.6
1,659,113	-		IAI47_07830	0.42	+2.6
1,659,136	+		IAI47_07830	0.44	-1.4
1,659,177	+		IAI47_07830	0.49	-1.5
1,659,178	-		IAI47_07830	0.49	+0.8
1,659,178	-		IAI47_07830	0.49	+1.7
1,659,203	-		IAI47_07830	0.51	+0.5
1,659,295	-		IAI47_07830	0.61	-1.3
1,659,295	-		IAI47_07830	0.61	-3.8
1,659,295	-		IAI47_07830	0.61	+0.5
1,659,295	-		IAI47_07830	0.61	+1.8
1,659,295	-		IAI47_07830	0.61	-0.9
1,659,295	-		IAI47_07830	0.61	+4.3
1,659,298	+		IAI47_07830	0.61	+3.0
1,659,298	+		IAI47_07830	0.61	-2.5
1,659,298	+		IAI47_07830	0.61	+0.4
1,659,298	+		IAI47_07830	0.61	+1.8
1,659,298	+		IAI47_07830	0.61	+1.3
1,659,298	+		IAI47_07830	0.61	-3.5
1,659,299	-		IAI47_07830	0.61	+2.6
1,659,299	-		IAI47_07830	0.61	-0.3
1,659,299	-		IAI47_07830	0.61	-1.5
1,659,299	-		IAI47_07830	0.61	-0.5
1,659,427	+		IAI47_07830	0.74	-0.1
1,659,513	+		IAI47_07830	0.83	-0.5
1,659,552	+		IAI47_07830	0.87	-0.1
1,659,568	-		IAI47_07830	0.88	-0.1
1,659,568	-		IAI47_07830	0.88	+1.3
1,659,595	+				+0.3
1,659,595	+				+0.3
1,659,655	+				+1.5
1,659,655	+				-0.1
1,659,655	+				+1.1
1,659,655	+				+2.3
1,659,656	-				-0.3
1,659,656	-				-0.3
1,659,656	-				+1.2
1,659,686	+				+0.1
1,659,686	+				+1.1
1,659,687	-				-1.7
1,659,703	+				-0.8
1,659,703	+				-1.3
1,659,734	+				+0.0
1,659,735	-				+0.3
1,659,735	-				+0.7
1,659,771	+				+2.1
1,659,771	+				+0.9
1,659,772	-				-1.4
1,659,772	-				-2.4
1,659,772	-				+1.2
1,659,772	-				-1.6
1,659,781	-				+0.6
1,659,906	+		IAI47_07835	0.14	+1.7
1,659,906	+		IAI47_07835	0.14	+1.2
1,659,906	+		IAI47_07835	0.14	+0.9
1,659,907	-		IAI47_07835	0.14	+2.5
1,659,907	-		IAI47_07835	0.14	+1.2
1,659,945	+		IAI47_07835	0.18	-2.0
1,659,946	-		IAI47_07835	0.19	+1.7
1,659,946	-		IAI47_07835	0.19	+0.2
1,659,951	+		IAI47_07835	0.19	+0.4
1,659,951	+		IAI47_07835	0.19	+1.6
1,660,009	-		IAI47_07835	0.25	-0.1
1,660,014	+		IAI47_07835	0.26	-0.1
1,660,014	+		IAI47_07835	0.26	-0.8
1,660,014	+		IAI47_07835	0.26	-1.0
1,660,015	-		IAI47_07835	0.26	+1.2
1,660,038	+		IAI47_07835	0.28	+1.2
1,660,039	-		IAI47_07835	0.28	+0.9
1,660,101	+		IAI47_07835	0.35	-1.9
1,660,107	-		IAI47_07835	0.36	-0.5
1,660,107	-		IAI47_07835	0.36	-0.8
1,660,107	-		IAI47_07835	0.36	-0.9
1,660,162	-		IAI47_07835	0.42	-0.5
1,660,188	+		IAI47_07835	0.44	+1.7
1,660,189	-		IAI47_07835	0.44	+0.7
1,660,192	+		IAI47_07835	0.45	-0.5
1,660,192	+		IAI47_07835	0.45	-1.1
1,660,192	+		IAI47_07835	0.45	+3.6
1,660,192	+		IAI47_07835	0.45	+1.5
1,660,192	+		IAI47_07835	0.45	+0.6
1,660,192	+		IAI47_07835	0.45	+1.8
1,660,192	+		IAI47_07835	0.45	-0.5
1,660,192	+		IAI47_07835	0.45	-0.9
1,660,192	+		IAI47_07835	0.45	+0.7
1,660,193	-		IAI47_07835	0.45	+0.2
1,660,193	-		IAI47_07835	0.45	+0.5
1,660,193	-		IAI47_07835	0.45	-1.5
1,660,193	-		IAI47_07835	0.45	+0.2
1,660,193	-		IAI47_07835	0.45	+0.1
1,660,193	-		IAI47_07835	0.45	-0.1
1,660,193	-		IAI47_07835	0.45	+0.1
1,660,193	-		IAI47_07835	0.45	+1.0
1,660,193	-		IAI47_07835	0.45	+1.8
1,660,194	+		IAI47_07835	0.45	+1.7
1,660,194	+		IAI47_07835	0.45	+1.8
1,660,195	-		IAI47_07835	0.45	+0.5
1,660,195	-		IAI47_07835	0.45	-0.1
1,660,483	-		IAI47_07835	0.76	-1.3
1,660,531	-		IAI47_07835	0.81	+2.6
1,660,531	-		IAI47_07835	0.81	-1.3
1,660,604	-		IAI47_07835	0.89	-1.8
1,660,671	+				+0.0
1,660,671	+				-0.3
1,660,674	+				+0.3
1,660,674	+				-1.1
1,660,674	+				+0.2
1,660,674	+				+1.1
1,660,675	-				+1.1
1,660,675	-				+0.1
1,660,675	-				+1.2
1,660,675	-				-0.5
1,660,677	+				-0.7
1,660,687	+				-1.3
1,660,688	-				+1.4
1,660,688	-				-0.1
1,660,688	-				-0.3
1,660,708	+				+0.6
1,660,709	-				+2.1
1,660,709	-				-0.0
1,660,716	-				+0.7
1,660,753	+				-1.3
1,660,753	+				+1.6
1,660,753	+				-0.3
1,660,754	-				+0.2
1,660,754	-				+0.7
1,660,754	-				-0.0
1,660,778	+				-0.1
1,660,779	-				+0.2
1,660,789	+				+0.7
1,660,841	+		IAI47_07840	0.13	+1.7
1,660,841	+		IAI47_07840	0.13	+0.8
1,660,842	-		IAI47_07840	0.13	-2.0
1,660,842	-		IAI47_07840	0.13	-2.6
1,660,842	-		IAI47_07840	0.13	+2.1
1,660,881	+		IAI47_07840	0.19	-0.0
1,660,881	+		IAI47_07840	0.19	+1.5
1,660,881	+		IAI47_07840	0.19	+0.9
1,660,966	+		IAI47_07840	0.31	+2.2
1,660,967	-		IAI47_07840	0.31	-1.4
1,660,967	-		IAI47_07840	0.31	+0.5
1,660,975	+		IAI47_07840	0.32	+0.5
1,660,976	-		IAI47_07840	0.32	+1.7
1,661,005	+		IAI47_07840	0.37	+1.3
1,661,005	+		IAI47_07840	0.37	+1.5
1,661,006	-		IAI47_07840	0.37	+1.1
1,661,012	+		IAI47_07840	0.38	-0.4
1,661,013	-		IAI47_07840	0.38	-2.1
1,661,013	-		IAI47_07840	0.38	+0.2
1,661,026	+		IAI47_07840	0.40	+0.1
1,661,026	+		IAI47_07840	0.40	-1.7
1,661,034	+		IAI47_07840	0.41	+0.4
1,661,034	+		IAI47_07840	0.41	-3.1
1,661,035	-		IAI47_07840	0.41	+1.5
1,661,035	-		IAI47_07840	0.41	+0.2
1,661,035	-		IAI47_07840	0.41	-1.4
1,661,056	+		IAI47_07840	0.44	-1.7
1,661,056	+		IAI47_07840	0.44	+3.8
1,661,056	+		IAI47_07840	0.44	+0.5
1,661,056	+		IAI47_07840	0.44	+1.9
1,661,056	+		IAI47_07840	0.44	-1.5
1,661,056	+		IAI47_07840	0.44	+3.4
1,661,056	+		IAI47_07840	0.44	-0.6
1,661,056	+		IAI47_07840	0.44	-1.8
1,661,056	+		IAI47_07840	0.44	+0.3
1,661,056	+		IAI47_07840	0.44	-1.0
1,661,056	+		IAI47_07840	0.44	-3.4
1,661,056	+		IAI47_07840	0.44	-1.4
1,661,056	+		IAI47_07840	0.44	+2.7
1,661,056	+		IAI47_07840	0.44	-1.7
1,661,056	+		IAI47_07840	0.44	-0.5
1,661,056	+		IAI47_07840	0.44	-3.7
1,661,056	+		IAI47_07840	0.44	+1.2
1,661,056	+		IAI47_07840	0.44	-1.2
1,661,056	+		IAI47_07840	0.44	-0.7
1,661,056	+		IAI47_07840	0.44	-1.5
1,661,056	+		IAI47_07840	0.44	-1.7
1,661,056	+		IAI47_07840	0.44	-0.8
1,661,057	-		IAI47_07840	0.44	-0.2
1,661,057	-		IAI47_07840	0.44	-1.1
1,661,057	-		IAI47_07840	0.44	+1.2
1,661,057	-		IAI47_07840	0.44	-1.1
1,661,057	-		IAI47_07840	0.44	+0.8
1,661,057	-		IAI47_07840	0.44	+1.8
1,661,057	-		IAI47_07840	0.44	-2.3
1,661,057	-		IAI47_07840	0.44	+1.5
1,661,057	-		IAI47_07840	0.44	+0.7
1,661,057	-		IAI47_07840	0.44	+1.1
1,661,057	-		IAI47_07840	0.44	+1.3
1,661,057	-		IAI47_07840	0.44	-2.8
1,661,057	-		IAI47_07840	0.44	-1.5
1,661,057	-		IAI47_07840	0.44	+2.3
1,661,063	+		IAI47_07840	0.45	+0.2
1,661,063	+		IAI47_07840	0.45	-0.8
1,661,064	-		IAI47_07840	0.45	-1.3
1,661,064	-		IAI47_07840	0.45	-1.5
1,661,128	+		IAI47_07840	0.55	-0.8
1,661,410	+				+0.1
1,661,410	+				-1.7
1,661,411	-				+5.1
1,661,417	+				-3.2
1,661,417	+				+1.5
1,661,417	+				+0.2
1,661,418	-				+1.3
1,661,418	-				-0.9
1,661,446	+				-0.3
1,661,447	-				-1.2
1,661,584	+				+1.2
1,661,602	+				+0.1
1,661,637	+		IAI47_07845	0.10	+1.7
1,661,637	+		IAI47_07845	0.10	+3.5
1,661,637	+		IAI47_07845	0.10	-0.7
1,661,637	+		IAI47_07845	0.10	-3.2
1,661,637	+		IAI47_07845	0.10	+0.8
1,661,638	-		IAI47_07845	0.10	+3.5
1,661,638	-		IAI47_07845	0.10	-0.3
1,661,638	-		IAI47_07845	0.10	+0.1
1,661,648	-		IAI47_07845	0.11	+0.7
1,661,699	-		IAI47_07845	0.17	+2.7
1,661,708	+		IAI47_07845	0.18	+0.7
1,661,708	+		IAI47_07845	0.18	+0.7
1,661,709	-		IAI47_07845	0.18	+0.2
1,661,709	-		IAI47_07845	0.18	-0.5