Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23780

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23775 and BWI76_RS23780 are separated by 12 nucleotidesBWI76_RS23780 and BWI76_RS23785 are separated by 14 nucleotidesBWI76_RS23785 and BWI76_RS23790 are separated by 52 nucleotides BWI76_RS23775: BWI76_RS23775 - 3,4-dihydroxybenzoate decarboxylase, at 4,963,127 to 4,964,620 _RS23775 BWI76_RS23780: BWI76_RS23780 - aromatic acid decarboxylase, at 4,964,633 to 4,965,211 _RS23780 BWI76_RS23785: BWI76_RS23785 - hypothetical protein, at 4,965,226 to 4,965,942 _RS23785 BWI76_RS23790: BWI76_RS23790 - isopentenyl-diphosphate Delta-isomerase, at 4,965,995 to 4,966,543 _RS23790 Position (kb) 4964 4965 4966Strain fitness (log2 ratio) -2 -1 0 1at 4963.877 kb on + strand, within BWI76_RS23775at 4963.881 kb on + strand, within BWI76_RS23775at 4963.891 kb on + strand, within BWI76_RS23775at 4963.899 kb on - strand, within BWI76_RS23775at 4963.949 kb on + strand, within BWI76_RS23775at 4963.984 kb on + strand, within BWI76_RS23775at 4964.088 kb on - strand, within BWI76_RS23775at 4964.103 kb on + strand, within BWI76_RS23775at 4964.103 kb on + strand, within BWI76_RS23775at 4964.164 kb on + strand, within BWI76_RS23775at 4964.383 kb on + strand, within BWI76_RS23775at 4964.383 kb on + strand, within BWI76_RS23775at 4964.383 kb on + strand, within BWI76_RS23775at 4964.391 kb on - strand, within BWI76_RS23775at 4964.391 kb on - strand, within BWI76_RS23775at 4964.391 kb on - strand, within BWI76_RS23775at 4964.391 kb on - strand, within BWI76_RS23775at 4964.449 kb on - strand, within BWI76_RS23775at 4964.454 kb on + strand, within BWI76_RS23775at 4964.472 kb on + strandat 4964.545 kb on - strandat 4964.583 kb on + strandat 4964.637 kb on - strandat 4964.637 kb on - strandat 4964.657 kb on - strandat 4964.685 kb on + strandat 4964.843 kb on + strand, within BWI76_RS23780at 4964.848 kb on + strand, within BWI76_RS23780at 4964.982 kb on + strand, within BWI76_RS23780at 4965.163 kb on + strandat 4965.178 kb on + strandat 4965.244 kb on - strandat 4965.335 kb on - strand, within BWI76_RS23785at 4965.343 kb on - strand, within BWI76_RS23785at 4965.358 kb on - strand, within BWI76_RS23785at 4965.535 kb on - strand, within BWI76_RS23785at 4965.688 kb on + strand, within BWI76_RS23785at 4965.711 kb on - strand, within BWI76_RS23785at 4966.034 kb on - strandat 4966.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,963,877 + BWI76_RS23775 0.50 +0.4
4,963,881 + BWI76_RS23775 0.50 -0.1
4,963,891 + BWI76_RS23775 0.51 -0.6
4,963,899 - BWI76_RS23775 0.52 +0.9
4,963,949 + BWI76_RS23775 0.55 -1.2
4,963,984 + BWI76_RS23775 0.57 +0.1
4,964,088 - BWI76_RS23775 0.64 -1.9
4,964,103 + BWI76_RS23775 0.65 -1.0
4,964,103 + BWI76_RS23775 0.65 -1.2
4,964,164 + BWI76_RS23775 0.69 +0.6
4,964,383 + BWI76_RS23775 0.84 +0.9
4,964,383 + BWI76_RS23775 0.84 +0.1
4,964,383 + BWI76_RS23775 0.84 +0.4
4,964,391 - BWI76_RS23775 0.85 -0.2
4,964,391 - BWI76_RS23775 0.85 +1.6
4,964,391 - BWI76_RS23775 0.85 -0.9
4,964,391 - BWI76_RS23775 0.85 +0.2
4,964,449 - BWI76_RS23775 0.88 -0.0
4,964,454 + BWI76_RS23775 0.89 +0.7
4,964,472 + +0.2
4,964,545 - -0.3
4,964,583 + -0.6
4,964,637 - -0.6
4,964,637 - +1.6
4,964,657 - -0.9
4,964,685 + -0.4
4,964,843 + BWI76_RS23780 0.36 +0.1
4,964,848 + BWI76_RS23780 0.37 -1.1
4,964,982 + BWI76_RS23780 0.60 -0.0
4,965,163 + +0.9
4,965,178 + +0.3
4,965,244 - -0.1
4,965,335 - BWI76_RS23785 0.15 -0.5
4,965,343 - BWI76_RS23785 0.16 -1.7
4,965,358 - BWI76_RS23785 0.18 +1.6
4,965,535 - BWI76_RS23785 0.43 -1.0
4,965,688 + BWI76_RS23785 0.64 -0.2
4,965,711 - BWI76_RS23785 0.68 +0.2
4,966,034 - -1.2
4,966,036 + +1.6

Or see this region's nucleotide sequence