Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21955

Experiment: NAG (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_21940 and AO353_21945 overlap by 8 nucleotidesAO353_21945 and AO353_21950 overlap by 4 nucleotidesAO353_21950 and AO353_21955 are separated by 1 nucleotidesAO353_21955 and AO353_21960 overlap by 4 nucleotidesAO353_21960 and AO353_21965 are separated by 16 nucleotidesAO353_21965 and AO353_21970 are separated by 24 nucleotides AO353_21940: AO353_21940 - protein nirG, at 4,809,466 to 4,809,909 _21940 AO353_21945: AO353_21945 - protein nirL, at 4,809,902 to 4,810,417 _21945 AO353_21950: AO353_21950 - AsnC family transcriptional regulator, at 4,810,414 to 4,810,872 _21950 AO353_21955: AO353_21955 - protein nirF, at 4,810,874 to 4,812,052 _21955 AO353_21960: AO353_21960 - disulfide bond formation protein DsbD, at 4,812,049 to 4,812,375 _21960 AO353_21965: AO353_21965 - cytochrome C biogenesis protein CcsA, at 4,812,392 to 4,812,706 _21965 AO353_21970: AO353_21970 - nitrite reductase, at 4,812,731 to 4,814,422 _21970 Position (kb) 4810 4811 4812 4813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4810.084 kb on - strand, within AO353_21945at 4810.116 kb on + strand, within AO353_21945at 4810.117 kb on - strand, within AO353_21945at 4810.335 kb on + strand, within AO353_21945at 4810.347 kb on - strand, within AO353_21945at 4810.379 kb on + strandat 4810.380 kb on - strandat 4810.495 kb on - strand, within AO353_21950at 4810.516 kb on + strand, within AO353_21950at 4810.568 kb on + strand, within AO353_21950at 4810.568 kb on + strand, within AO353_21950at 4810.568 kb on + strand, within AO353_21950at 4810.569 kb on - strand, within AO353_21950at 4810.569 kb on - strand, within AO353_21950at 4810.569 kb on - strand, within AO353_21950at 4810.569 kb on - strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strand, within AO353_21950at 4810.586 kb on + strandat 4810.587 kb on - strand, within AO353_21950at 4810.587 kb on - strand, within AO353_21950at 4810.798 kb on - strand, within AO353_21950at 4810.798 kb on - strand, within AO353_21950at 4810.798 kb on - strand, within AO353_21950at 4810.798 kb on - strand, within AO353_21950at 4810.800 kb on - strand, within AO353_21950at 4810.800 kb on - strand, within AO353_21950at 4810.800 kb on - strand, within AO353_21950at 4810.878 kb on + strandat 4810.959 kb on + strandat 4811.234 kb on + strand, within AO353_21955at 4811.235 kb on - strand, within AO353_21955at 4811.310 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.427 kb on + strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.428 kb on - strand, within AO353_21955at 4811.430 kb on + strand, within AO353_21955at 4811.446 kb on + strandat 4811.447 kb on - strand, within AO353_21955at 4811.460 kb on + strand, within AO353_21955at 4811.460 kb on + strand, within AO353_21955at 4811.460 kb on + strand, within AO353_21955at 4811.461 kb on - strand, within AO353_21955at 4811.461 kb on - strand, within AO353_21955at 4811.461 kb on - strand, within AO353_21955at 4811.461 kb on - strand, within AO353_21955at 4811.461 kb on - strand, within AO353_21955at 4811.672 kb on + strand, within AO353_21955at 4811.673 kb on - strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.694 kb on + strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.695 kb on - strand, within AO353_21955at 4811.767 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.829 kb on + strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.830 kb on - strand, within AO353_21955at 4811.933 kb on + strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.934 kb on - strand, within AO353_21955at 4811.960 kb on + strandat 4811.960 kb on + strandat 4811.961 kb on - strandat 4811.961 kb on - strandat 4812.393 kb on + strandat 4812.394 kb on - strandat 4812.505 kb on + strand, within AO353_21965at 4812.552 kb on - strand, within AO353_21965at 4812.735 kb on + strandat 4812.736 kb on - strandat 4812.736 kb on - strandat 4812.756 kb on + strandat 4812.756 kb on + strandat 4812.756 kb on + strandat 4812.757 kb on - strandat 4812.757 kb on - strandat 4812.757 kb on - strandat 4812.782 kb on - strandat 4812.906 kb on + strand, within AO353_21970at 4812.906 kb on + strandat 4812.907 kb on - strand, within AO353_21970at 4812.907 kb on - strand, within AO353_21970at 4812.907 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.918 kb on - strand, within AO353_21970at 4812.951 kb on + strand, within AO353_21970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
remove
4,810,084 - AO353_21945 0.35 -0.2
4,810,116 + AO353_21945 0.41 +1.3
4,810,117 - AO353_21945 0.42 +0.2
4,810,335 + AO353_21945 0.84 -0.6
4,810,347 - AO353_21945 0.86 -0.2
4,810,379 + +0.1
4,810,380 - -1.2
4,810,495 - AO353_21950 0.18 +0.6
4,810,516 + AO353_21950 0.22 -1.0
4,810,568 + AO353_21950 0.34 -0.3
4,810,568 + AO353_21950 0.34 -0.2
4,810,568 + AO353_21950 0.34 +0.6
4,810,569 - AO353_21950 0.34 +0.1
4,810,569 - AO353_21950 0.34 -0.1
4,810,569 - AO353_21950 0.34 -0.9
4,810,569 - AO353_21950 0.34 -1.6
4,810,586 + AO353_21950 0.37 +0.8
4,810,586 + AO353_21950 0.37 +0.2
4,810,586 + AO353_21950 0.37 -0.3
4,810,586 + AO353_21950 0.37 +0.4
4,810,586 + AO353_21950 0.37 -0.1
4,810,586 + AO353_21950 0.37 -0.8
4,810,586 + AO353_21950 0.37 -1.0
4,810,586 + -0.0
4,810,587 - AO353_21950 0.38 -2.0
4,810,587 - AO353_21950 0.38 -1.9
4,810,798 - AO353_21950 0.84 -1.0
4,810,798 - AO353_21950 0.84 -0.0
4,810,798 - AO353_21950 0.84 -0.3
4,810,798 - AO353_21950 0.84 +0.1
4,810,800 - AO353_21950 0.84 +1.1
4,810,800 - AO353_21950 0.84 +0.2
4,810,800 - AO353_21950 0.84 -0.4
4,810,878 + -0.2
4,810,959 + +0.8
4,811,234 + AO353_21955 0.31 +0.9
4,811,235 - AO353_21955 0.31 -0.8
4,811,310 + AO353_21955 0.37 +0.6
4,811,427 + AO353_21955 0.47 -1.6
4,811,427 + AO353_21955 0.47 -0.3
4,811,427 + AO353_21955 0.47 +0.2
4,811,427 + AO353_21955 0.47 -0.2
4,811,427 + AO353_21955 0.47 -0.9
4,811,427 + AO353_21955 0.47 +0.1
4,811,427 + AO353_21955 0.47 -1.0
4,811,427 + AO353_21955 0.47 -1.0
4,811,427 + AO353_21955 0.47 +0.6
4,811,427 + AO353_21955 0.47 -1.4
4,811,427 + AO353_21955 0.47 +0.9
4,811,427 + AO353_21955 0.47 -1.6
4,811,428 - AO353_21955 0.47 +0.2
4,811,428 - AO353_21955 0.47 +0.6
4,811,428 - AO353_21955 0.47 +0.8
4,811,428 - AO353_21955 0.47 -0.2
4,811,428 - AO353_21955 0.47 +0.4
4,811,428 - AO353_21955 0.47 -0.1
4,811,428 - AO353_21955 0.47 -1.6
4,811,428 - AO353_21955 0.47 +1.2
4,811,430 + AO353_21955 0.47 +0.1
4,811,446 + +1.8
4,811,447 - AO353_21955 0.49 -1.1
4,811,460 + AO353_21955 0.50 +0.2
4,811,460 + AO353_21955 0.50 -0.2
4,811,460 + AO353_21955 0.50 -0.3
4,811,461 - AO353_21955 0.50 -2.4
4,811,461 - AO353_21955 0.50 +0.6
4,811,461 - AO353_21955 0.50 -0.9
4,811,461 - AO353_21955 0.50 -0.5
4,811,461 - AO353_21955 0.50 -0.5
4,811,672 + AO353_21955 0.68 -1.2
4,811,673 - AO353_21955 0.68 -1.0
4,811,694 + AO353_21955 0.70 +2.4
4,811,694 + AO353_21955 0.70 -2.5
4,811,694 + AO353_21955 0.70 +1.6
4,811,694 + AO353_21955 0.70 -0.3
4,811,694 + AO353_21955 0.70 +1.1
4,811,694 + AO353_21955 0.70 +0.6
4,811,694 + AO353_21955 0.70 -0.6
4,811,694 + AO353_21955 0.70 +0.2
4,811,694 + AO353_21955 0.70 -0.1
4,811,694 + AO353_21955 0.70 -0.0
4,811,695 - AO353_21955 0.70 -0.0
4,811,695 - AO353_21955 0.70 +0.4
4,811,695 - AO353_21955 0.70 +1.0
4,811,695 - AO353_21955 0.70 -2.2
4,811,695 - AO353_21955 0.70 +0.3
4,811,695 - AO353_21955 0.70 +0.3
4,811,695 - AO353_21955 0.70 -0.1
4,811,695 - AO353_21955 0.70 -1.2
4,811,695 - AO353_21955 0.70 +1.1
4,811,695 - AO353_21955 0.70 -1.0
4,811,767 + AO353_21955 0.76 -0.0
4,811,829 + AO353_21955 0.81 -2.3
4,811,829 + AO353_21955 0.81 -1.2
4,811,829 + AO353_21955 0.81 -0.1
4,811,829 + AO353_21955 0.81 -0.7
4,811,829 + AO353_21955 0.81 +0.8
4,811,829 + AO353_21955 0.81 +0.7
4,811,829 + AO353_21955 0.81 -0.8
4,811,829 + AO353_21955 0.81 -1.8
4,811,829 + AO353_21955 0.81 -0.2
4,811,829 + AO353_21955 0.81 -0.3
4,811,830 - AO353_21955 0.81 -0.8
4,811,830 - AO353_21955 0.81 -0.6
4,811,830 - AO353_21955 0.81 -0.2
4,811,830 - AO353_21955 0.81 +0.1
4,811,830 - AO353_21955 0.81 +0.2
4,811,830 - AO353_21955 0.81 -1.1
4,811,830 - AO353_21955 0.81 -0.5
4,811,830 - AO353_21955 0.81 -0.7
4,811,830 - AO353_21955 0.81 -0.1
4,811,830 - AO353_21955 0.81 +1.1
4,811,830 - AO353_21955 0.81 +1.0
4,811,830 - AO353_21955 0.81 +1.1
4,811,830 - AO353_21955 0.81 -0.4
4,811,933 + AO353_21955 0.90 +0.6
4,811,934 - AO353_21955 0.90 -0.0
4,811,934 - AO353_21955 0.90 +0.2
4,811,934 - AO353_21955 0.90 -1.3
4,811,934 - AO353_21955 0.90 -0.1
4,811,960 + -0.1
4,811,960 + -0.1
4,811,961 - +0.2
4,811,961 - +1.5
4,812,393 + -0.2
4,812,394 - -0.0
4,812,505 + AO353_21965 0.36 +0.8
4,812,552 - AO353_21965 0.51 +1.6
4,812,735 + +0.7
4,812,736 - +0.8
4,812,736 - -1.9
4,812,756 + -0.6
4,812,756 + -3.4
4,812,756 + +0.2
4,812,757 - -0.1
4,812,757 - -1.8
4,812,757 - -0.2
4,812,782 - -1.0
4,812,906 + AO353_21970 0.10 -0.8
4,812,906 + -1.4
4,812,907 - AO353_21970 0.10 -1.5
4,812,907 - AO353_21970 0.10 -0.2
4,812,907 - AO353_21970 0.10 -0.1
4,812,918 - AO353_21970 0.11 +0.3
4,812,918 - AO353_21970 0.11 -2.1
4,812,918 - AO353_21970 0.11 +0.1
4,812,918 - AO353_21970 0.11 +1.6
4,812,951 + AO353_21970 0.13 +1.4

Or see this region's nucleotide sequence