Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002416

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,710,408	+		ABIE53_002415	0.15	-0.3
2,710,408	+		ABIE53_002415	0.15	-0.2
2,710,408	+		ABIE53_002415	0.15	-0.8
2,710,409	-		ABIE53_002415	0.15	-0.0
2,710,409	-		ABIE53_002415	0.15	+1.0
2,710,630	+		ABIE53_002415	0.38	+1.0
2,710,675	+		ABIE53_002415	0.42	+1.5
2,710,675	+		ABIE53_002415	0.42	+0.3
2,710,675	+		ABIE53_002415	0.42	-1.0
2,710,676	-		ABIE53_002415	0.42	+1.0
2,710,676	-		ABIE53_002415	0.42	+0.9
2,710,676	-		ABIE53_002415	0.42	+2.0
2,710,676	-		ABIE53_002415	0.42	+2.8
2,711,132	+		ABIE53_002415	0.89	+0.4
2,711,132	+		ABIE53_002415	0.89	+0.7
2,711,132	+		ABIE53_002415	0.89	+1.0
2,711,132	+		ABIE53_002415	0.89	+0.0
2,711,132	+		ABIE53_002415	0.89	-0.5
2,711,132	+		ABIE53_002415	0.89	+0.6
2,711,132	+		ABIE53_002415	0.89	+2.8
2,711,133	-		ABIE53_002415	0.89	+1.7
2,711,133	-		ABIE53_002415	0.89	-2.2
2,711,133	-		ABIE53_002415	0.89	+0.6
2,711,133	-		ABIE53_002415	0.89	-0.4
2,711,133	-		ABIE53_002415	0.89	+0.1
2,711,133	-		ABIE53_002415	0.89	-0.5
2,711,133	-		ABIE53_002415	0.89	-1.0
2,711,133	-		ABIE53_002415	0.89	+1.0
2,711,142	+		ABIE53_002415	0.90	-0.4
2,711,142	+		ABIE53_002415	0.90	-0.3
2,711,142	+		ABIE53_002415	0.90	-1.8
2,711,142	+		ABIE53_002415	0.90	-1.6
2,711,142	+		ABIE53_002415	0.90	+0.4
2,711,142	+		ABIE53_002415	0.90	-1.8
2,711,142	+		ABIE53_002415	0.90	+0.6
2,711,142	+		ABIE53_002415	0.90	+0.4
2,711,142	+		ABIE53_002415	0.90	-1.3
2,711,143	-		ABIE53_002415	0.90	-0.7
2,711,143	-		ABIE53_002415	0.90	-0.4
2,711,143	-		ABIE53_002415	0.90	+0.6
2,711,143	-		ABIE53_002415	0.90	+0.6
2,711,143	-		ABIE53_002415	0.90	+0.8
2,711,143	-		ABIE53_002415	0.90	+0.5
2,711,143	-		ABIE53_002415	0.90	-1.4
2,711,143	-		ABIE53_002415	0.90	-0.2
2,711,143	-		ABIE53_002415	0.90	-1.4
2,711,144	-		ABIE53_002415	0.90	-0.3
2,711,154	+				+1.3
2,711,154	+				-1.6
2,711,154	+				-0.4
2,711,154	+				-1.6
2,711,154	+				-0.6
2,711,154	+				+0.2
2,711,155	-				+1.0
2,711,155	-				-1.3
2,711,155	-				-0.4
2,711,155	-				+1.7
2,711,155	-				+2.0
2,711,155	-				-2.6
2,711,155	-				-1.4
2,711,202	-				-2.2
2,711,242	+				-0.4
2,711,391	+				+1.0
2,711,391	+				+1.5
2,711,391	+				-0.2
2,711,392	-				+0.2
2,711,423	+				-1.8
2,711,423	+				+0.4
2,711,424	-				-0.4
2,711,722	-		ABIE53_002416	0.14	-2.9
2,711,722	-		ABIE53_002416	0.14	+1.6
2,711,787	+		ABIE53_002416	0.16	+0.7
2,711,787	+		ABIE53_002416	0.16	+0.6
2,711,788	-		ABIE53_002416	0.16	-0.9
2,711,788	-		ABIE53_002416	0.16	+0.2
2,711,788	-		ABIE53_002416	0.16	+1.0
2,711,788	-		ABIE53_002416	0.16	+0.3
2,711,788	-		ABIE53_002416	0.16	+0.7
2,711,901	-		ABIE53_002416	0.21	+0.0
2,711,924	+		ABIE53_002416	0.22	-0.5
2,712,029	+		ABIE53_002416	0.26	-0.7
2,712,029	+		ABIE53_002416	0.26	-0.9
2,712,056	+		ABIE53_002416	0.27	-0.2
2,712,057	-		ABIE53_002416	0.27	-0.0
2,712,160	+		ABIE53_002416	0.31	-0.9
2,712,161	-		ABIE53_002416	0.31	+0.2
2,712,161	-		ABIE53_002416	0.31	-0.8
2,712,218	+		ABIE53_002416	0.33	+0.2
2,712,219	-		ABIE53_002416	0.33	-0.9
2,712,219	-		ABIE53_002416	0.33	-0.6
2,712,219	-		ABIE53_002416	0.33	+0.4
2,712,219	-		ABIE53_002416	0.33	+0.7
2,712,569	+		ABIE53_002416	0.47	-2.6
2,712,569	+		ABIE53_002416	0.47	+0.4
2,712,570	-		ABIE53_002416	0.47	+0.2
2,712,570	-		ABIE53_002416	0.47	+0.3
2,712,656	+		ABIE53_002416	0.51	+0.3
2,712,656	+		ABIE53_002416	0.51	-0.6
2,712,656	+		ABIE53_002416	0.51	+0.3
2,712,656	+		ABIE53_002416	0.51	-0.1
2,712,657	-		ABIE53_002416	0.51	+2.6
2,712,657	-		ABIE53_002416	0.51	+1.5
2,712,657	-		ABIE53_002416	0.51	-0.6
2,712,696	+		ABIE53_002416	0.52	-1.0
2,712,697	-		ABIE53_002416	0.52	-0.7
2,712,697	-		ABIE53_002416	0.52	-1.7
2,712,740	+		ABIE53_002416	0.54	+0.4
2,712,740	+		ABIE53_002416	0.54	-0.6
2,712,740	+		ABIE53_002416	0.54	-0.1
2,712,741	-		ABIE53_002416	0.54	+0.2
2,712,741	-		ABIE53_002416	0.54	-0.0
2,712,741	-		ABIE53_002416	0.54	-0.8
2,712,938	+		ABIE53_002416	0.62	-0.0
2,712,939	-		ABIE53_002416	0.62	-1.1
2,712,939	-		ABIE53_002416	0.62	-0.0
2,712,939	-		ABIE53_002416	0.62	-1.2
2,713,051	+		ABIE53_002416	0.66	+0.2
2,713,062	-		ABIE53_002416	0.67	+1.6
2,713,124	+		ABIE53_002416	0.69	+1.6
2,713,124	+		ABIE53_002416	0.69	-1.3
2,713,124	+		ABIE53_002416	0.69	+0.5
2,713,124	+		ABIE53_002416	0.69	+1.8
2,713,125	-		ABIE53_002416	0.69	+0.7
2,713,125	-		ABIE53_002416	0.69	-0.7
2,713,127	+		ABIE53_002416	0.69	-0.0
2,713,128	-		ABIE53_002416	0.69	+2.6
2,713,128	-		ABIE53_002416	0.69	+0.2
2,713,256	+		ABIE53_002416	0.74	-0.5
2,713,256	+		ABIE53_002416	0.74	+1.0
2,713,257	-		ABIE53_002416	0.74	+1.5
2,713,349	+		ABIE53_002416	0.78	-0.8
2,713,388	+		ABIE53_002416	0.80	+2.6
2,713,539	+		ABIE53_002416	0.86	-1.1
2,713,540	-		ABIE53_002416	0.86	-0.0
2,713,540	-		ABIE53_002416	0.86	-1.6
2,713,540	-		ABIE53_002416	0.86	-0.2
2,714,003	+				+0.4
2,714,531	+		ABIE53_002417	0.37	-0.4
2,714,531	+		ABIE53_002417	0.37	-0.5
2,714,532	-		ABIE53_002417	0.37	-1.0
2,714,532	-		ABIE53_002417	0.37	+1.0
2,714,600	+		ABIE53_002417	0.42	+2.0
2,714,600	+		ABIE53_002417	0.42	+0.7
2,714,601	-		ABIE53_002417	0.42	+1.0
2,714,601	-		ABIE53_002417	0.42	-0.0
2,714,601	-		ABIE53_002417	0.42	+0.1
2,714,601	-		ABIE53_002417	0.42	+3.8
2,714,601	-		ABIE53_002417	0.42	-0.9
2,714,665	+		ABIE53_002417	0.47	+0.1