Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_654

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_652 and Pf1N1B4_653 are separated by 2 nucleotidesPf1N1B4_653 and Pf1N1B4_654 are separated by 134 nucleotidesPf1N1B4_654 and Pf1N1B4_655 overlap by 4 nucleotidesPf1N1B4_655 and Pf1N1B4_656 are separated by 164 nucleotides Pf1N1B4_652 - Sensory box histidine kinase, at 745,642 to 747,678 _652 Pf1N1B4_653 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 747,681 to 748,262 _653 Pf1N1B4_654 - Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein, at 748,397 to 749,341 _654 Pf1N1B4_655 - Glutathione S-transferase (EC 2.5.1.18), at 749,338 to 749,970 _655 Pf1N1B4_656 - Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1), at 750,135 to 751,352 _656 Position (kb) 748 749 750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 747.474 kb on + strand, within Pf1N1B4_652at 747.474 kb on + strand, within Pf1N1B4_652at 747.474 kb on + strand, within Pf1N1B4_652at 747.474 kb on + strand, within Pf1N1B4_652at 747.474 kb on + strand, within Pf1N1B4_652at 747.474 kb on + strand, within Pf1N1B4_652at 747.475 kb on - strandat 747.475 kb on - strandat 747.541 kb on + strandat 747.541 kb on + strandat 747.676 kb on + strandat 747.705 kb on + strandat 747.706 kb on - strandat 747.706 kb on - strandat 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.854 kb on + strand, within Pf1N1B4_653at 747.855 kb on - strand, within Pf1N1B4_653at 747.855 kb on - strand, within Pf1N1B4_653at 747.855 kb on - strand, within Pf1N1B4_653at 747.855 kb on - strand, within Pf1N1B4_653at 747.858 kb on + strand, within Pf1N1B4_653at 747.858 kb on + strand, within Pf1N1B4_653at 747.858 kb on + strand, within Pf1N1B4_653at 747.858 kb on + strand, within Pf1N1B4_653at 747.945 kb on + strand, within Pf1N1B4_653at 747.946 kb on - strand, within Pf1N1B4_653at 747.946 kb on - strand, within Pf1N1B4_653at 748.072 kb on + strand, within Pf1N1B4_653at 748.072 kb on + strand, within Pf1N1B4_653at 748.072 kb on + strand, within Pf1N1B4_653at 748.072 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.155 kb on + strand, within Pf1N1B4_653at 748.156 kb on - strand, within Pf1N1B4_653at 748.156 kb on - strand, within Pf1N1B4_653at 748.156 kb on - strand, within Pf1N1B4_653at 748.156 kb on - strand, within Pf1N1B4_653at 748.157 kb on + strand, within Pf1N1B4_653at 748.157 kb on + strand, within Pf1N1B4_653at 748.157 kb on + strand, within Pf1N1B4_653at 748.158 kb on - strand, within Pf1N1B4_653at 748.158 kb on - strand, within Pf1N1B4_653at 748.260 kb on + strandat 748.320 kb on + strandat 748.508 kb on - strand, within Pf1N1B4_654at 748.525 kb on + strand, within Pf1N1B4_654at 748.525 kb on + strand, within Pf1N1B4_654at 748.525 kb on + strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.526 kb on - strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.698 kb on + strand, within Pf1N1B4_654at 748.699 kb on - strand, within Pf1N1B4_654at 748.699 kb on - strand, within Pf1N1B4_654at 748.699 kb on - strand, within Pf1N1B4_654at 748.939 kb on + strand, within Pf1N1B4_654at 748.947 kb on + strand, within Pf1N1B4_654at 748.947 kb on + strand, within Pf1N1B4_654at 748.948 kb on - strand, within Pf1N1B4_654at 749.005 kb on - strand, within Pf1N1B4_654at 749.324 kb on + strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.325 kb on - strandat 749.347 kb on + strandat 749.347 kb on + strandat 749.348 kb on - strandat 749.348 kb on - strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.396 kb on + strandat 749.397 kb on - strandat 749.411 kb on + strand, within Pf1N1B4_655at 749.411 kb on + strand, within Pf1N1B4_655at 749.411 kb on + strand, within Pf1N1B4_655at 749.411 kb on + strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.412 kb on - strand, within Pf1N1B4_655at 749.437 kb on + strand, within Pf1N1B4_655at 749.437 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.444 kb on + strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.445 kb on - strand, within Pf1N1B4_655at 749.459 kb on - strand, within Pf1N1B4_655at 749.634 kb on + strand, within Pf1N1B4_655at 749.634 kb on + strand, within Pf1N1B4_655at 749.634 kb on + strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.635 kb on - strand, within Pf1N1B4_655at 749.750 kb on + strand, within Pf1N1B4_655at 749.751 kb on - strand, within Pf1N1B4_655at 749.882 kb on + strand, within Pf1N1B4_655at 749.989 kb on - strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.136 kb on + strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.137 kb on - strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.140 kb on + strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.141 kb on - strandat 750.145 kb on + strandat 750.166 kb on + strandat 750.166 kb on + strandat 750.167 kb on - strandat 750.167 kb on - strandat 750.167 kb on - strandat 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.280 kb on + strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.281 kb on - strand, within Pf1N1B4_656at 750.330 kb on + strand, within Pf1N1B4_656at 750.330 kb on + strandat 750.330 kb on + strand, within Pf1N1B4_656at 750.330 kb on + strand, within Pf1N1B4_656at 750.330 kb on + strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656at 750.331 kb on - strand, within Pf1N1B4_656

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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747,474 + Pf1N1B4_652 0.90 +1.6
747,474 + Pf1N1B4_652 0.90 +2.6
747,474 + Pf1N1B4_652 0.90 +1.4
747,474 + Pf1N1B4_652 0.90 +1.1
747,474 + Pf1N1B4_652 0.90 +1.0
747,474 + Pf1N1B4_652 0.90 +1.9
747,475 - +2.1
747,475 - +1.0
747,541 + +2.5
747,541 + +4.0
747,676 + +1.3
747,705 + +0.3
747,706 - -1.8
747,706 - +0.6
747,854 + Pf1N1B4_653 0.30 -0.8
747,854 + Pf1N1B4_653 0.30 -0.5
747,854 + Pf1N1B4_653 0.30 +0.7
747,854 + Pf1N1B4_653 0.30 +0.8
747,854 + Pf1N1B4_653 0.30 +1.5
747,854 + Pf1N1B4_653 0.30 +0.3
747,854 + Pf1N1B4_653 0.30 +1.1
747,854 + Pf1N1B4_653 0.30 +1.2
747,854 + Pf1N1B4_653 0.30 +1.8
747,855 - Pf1N1B4_653 0.30 +2.1
747,855 - Pf1N1B4_653 0.30 -0.5
747,855 - Pf1N1B4_653 0.30 +0.9
747,855 - Pf1N1B4_653 0.30 +1.7
747,858 + Pf1N1B4_653 0.30 +2.1
747,858 + Pf1N1B4_653 0.30 +3.0
747,858 + Pf1N1B4_653 0.30 +0.8
747,858 + Pf1N1B4_653 0.30 -0.7
747,945 + Pf1N1B4_653 0.45 +0.8
747,946 - Pf1N1B4_653 0.46 +0.1
747,946 - Pf1N1B4_653 0.46 +0.2
748,072 + Pf1N1B4_653 0.67 -3.0
748,072 + Pf1N1B4_653 0.67 -0.8
748,072 + Pf1N1B4_653 0.67 +0.3
748,072 + Pf1N1B4_653 0.67 +0.8
748,155 + Pf1N1B4_653 0.81 +0.1
748,155 + Pf1N1B4_653 0.81 +1.2
748,155 + Pf1N1B4_653 0.81 +1.4
748,155 + Pf1N1B4_653 0.81 +1.1
748,155 + Pf1N1B4_653 0.81 -2.3
748,155 + Pf1N1B4_653 0.81 +1.4
748,155 + Pf1N1B4_653 0.81 +1.4
748,156 - Pf1N1B4_653 0.82 -3.6
748,156 - Pf1N1B4_653 0.82 -0.0
748,156 - Pf1N1B4_653 0.82 +0.1
748,156 - Pf1N1B4_653 0.82 -0.6
748,157 + Pf1N1B4_653 0.82 +0.5
748,157 + Pf1N1B4_653 0.82 -1.0
748,157 + Pf1N1B4_653 0.82 +0.9
748,158 - Pf1N1B4_653 0.82 -0.7
748,158 - Pf1N1B4_653 0.82 -2.0
748,260 + -0.9
748,320 + +1.0
748,508 - Pf1N1B4_654 0.12 -2.5
748,525 + Pf1N1B4_654 0.14 -1.2
748,525 + Pf1N1B4_654 0.14 -1.6
748,525 + Pf1N1B4_654 0.14 +0.3
748,526 - Pf1N1B4_654 0.14 -2.0
748,526 - Pf1N1B4_654 0.14 -1.5
748,526 - Pf1N1B4_654 0.14 -1.9
748,526 - Pf1N1B4_654 0.14 -1.5
748,698 + Pf1N1B4_654 0.32 +0.1
748,698 + Pf1N1B4_654 0.32 -1.1
748,698 + Pf1N1B4_654 0.32 -2.9
748,698 + Pf1N1B4_654 0.32 -0.9
748,698 + Pf1N1B4_654 0.32 -2.9
748,698 + Pf1N1B4_654 0.32 -2.3
748,698 + Pf1N1B4_654 0.32 -1.1
748,699 - Pf1N1B4_654 0.32 -1.0
748,699 - Pf1N1B4_654 0.32 -1.4
748,699 - Pf1N1B4_654 0.32 -1.5
748,939 + Pf1N1B4_654 0.57 -1.8
748,947 + Pf1N1B4_654 0.58 -0.6
748,947 + Pf1N1B4_654 0.58 -1.8
748,948 - Pf1N1B4_654 0.58 +0.2
749,005 - Pf1N1B4_654 0.64 -0.9
749,324 + -1.1
749,325 - +0.2
749,325 - -1.7
749,325 - +2.9
749,325 - +0.4
749,325 - +0.7
749,325 - +0.6
749,347 + +1.5
749,347 + -0.5
749,348 - -1.2
749,348 - +1.0
749,396 + +3.4
749,396 + +0.1
749,396 + +0.3
749,396 + +1.4
749,396 + +0.4
749,396 + +1.3
749,397 - +2.1
749,411 + Pf1N1B4_655 0.12 +0.8
749,411 + Pf1N1B4_655 0.12 -3.0
749,411 + Pf1N1B4_655 0.12 +1.5
749,411 + Pf1N1B4_655 0.12 -1.3
749,412 - Pf1N1B4_655 0.12 -0.4
749,412 - Pf1N1B4_655 0.12 -0.8
749,412 - Pf1N1B4_655 0.12 +0.6
749,412 - Pf1N1B4_655 0.12 +1.3
749,412 - Pf1N1B4_655 0.12 -1.3
749,437 + Pf1N1B4_655 0.16 +2.3
749,437 + Pf1N1B4_655 0.16 -0.5
749,444 + Pf1N1B4_655 0.17 +2.3
749,444 + Pf1N1B4_655 0.17 +1.0
749,444 + Pf1N1B4_655 0.17 -0.2
749,444 + Pf1N1B4_655 0.17 +1.6
749,445 - Pf1N1B4_655 0.17 +0.8
749,445 - Pf1N1B4_655 0.17 +0.6
749,445 - Pf1N1B4_655 0.17 +0.7
749,445 - Pf1N1B4_655 0.17 -1.0
749,445 - Pf1N1B4_655 0.17 +1.3
749,459 - Pf1N1B4_655 0.19 -1.3
749,634 + Pf1N1B4_655 0.47 +1.0
749,634 + Pf1N1B4_655 0.47 +1.3
749,634 + Pf1N1B4_655 0.47 -1.8
749,635 - Pf1N1B4_655 0.47 +0.7
749,635 - Pf1N1B4_655 0.47 -0.6
749,635 - Pf1N1B4_655 0.47 -0.7
749,635 - Pf1N1B4_655 0.47 +0.1
749,635 - Pf1N1B4_655 0.47 -2.0
749,750 + Pf1N1B4_655 0.65 +1.6
749,751 - Pf1N1B4_655 0.65 +1.6
749,882 + Pf1N1B4_655 0.86 +1.1
749,989 - +0.3
750,136 + -0.7
750,136 + +0.6
750,136 + +0.7
750,136 + -1.0
750,136 + -0.7
750,137 - +0.3
750,137 - -1.2
750,137 - +0.1
750,137 - -0.7
750,137 - -1.3
750,140 + +2.2
750,140 + +2.8
750,140 + +1.2
750,140 + +1.4
750,140 + +2.1
750,140 + +2.4
750,140 + +1.8
750,140 + +3.9
750,140 + +4.0
750,140 + +2.4
750,140 + +3.3
750,140 + -0.7
750,140 + +2.9
750,140 + +1.9
750,140 + +2.6
750,141 - +2.1
750,141 - +2.3
750,141 - +1.9
750,141 - +2.3
750,141 - -0.1
750,141 - +2.9
750,141 - +3.3
750,141 - -0.4
750,141 - +1.9
750,141 - +2.2
750,141 - +1.0
750,141 - +1.5
750,141 - +2.7
750,141 - +2.7
750,141 - +1.8
750,145 + +2.2
750,166 + +2.2
750,166 + +2.4
750,167 - +2.5
750,167 - +2.6
750,167 - +2.7
750,280 + Pf1N1B4_656 0.12 +2.0
750,280 + Pf1N1B4_656 0.12 +2.9
750,280 + Pf1N1B4_656 0.12 +3.0
750,280 + Pf1N1B4_656 0.12 +2.9
750,280 + Pf1N1B4_656 0.12 +2.9
750,280 + Pf1N1B4_656 0.12 +2.6
750,281 - Pf1N1B4_656 0.12 +3.2
750,281 - Pf1N1B4_656 0.12 +0.2
750,281 - Pf1N1B4_656 0.12 +2.7
750,281 - Pf1N1B4_656 0.12 +1.5
750,281 - Pf1N1B4_656 0.12 +2.4
750,281 - Pf1N1B4_656 0.12 +2.0
750,281 - Pf1N1B4_656 0.12 +1.8
750,330 + Pf1N1B4_656 0.16 +3.3
750,330 + +2.9
750,330 + Pf1N1B4_656 0.16 +2.6
750,330 + Pf1N1B4_656 0.16 +2.3
750,330 + Pf1N1B4_656 0.16 +2.7
750,331 - Pf1N1B4_656 0.16 -1.8
750,331 - Pf1N1B4_656 0.16 +3.3
750,331 - Pf1N1B4_656 0.16 +2.8
750,331 - Pf1N1B4_656 0.16 +3.1
750,331 - Pf1N1B4_656 0.16 +2.7

Or see this region's nucleotide sequence