Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5856

Experiment: Minimal media pH9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5855 and Pf1N1B4_5856 are separated by 119 nucleotidesPf1N1B4_5856 and Pf1N1B4_5857 are separated by 61 nucleotides Pf1N1B4_5855 - Putrescine importer, at 287,380 to 288,729 _5855 Pf1N1B4_5856 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 288,849 to 289,880 _5856 Pf1N1B4_5857 - Arginine N-succinyltransferase (EC 2.3.1.109), at 289,942 to 290,976 _5857 Position (kb) 288 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 287.852 kb on + strand, within Pf1N1B4_5855at 287.891 kb on - strand, within Pf1N1B4_5855at 287.922 kb on + strand, within Pf1N1B4_5855at 287.950 kb on + strand, within Pf1N1B4_5855at 287.951 kb on - strand, within Pf1N1B4_5855at 287.951 kb on - strand, within Pf1N1B4_5855at 287.951 kb on - strand, within Pf1N1B4_5855at 288.194 kb on - strand, within Pf1N1B4_5855at 288.382 kb on + strand, within Pf1N1B4_5855at 288.394 kb on + strand, within Pf1N1B4_5855at 288.394 kb on + strand, within Pf1N1B4_5855at 288.395 kb on - strand, within Pf1N1B4_5855at 288.395 kb on - strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.520 kb on + strand, within Pf1N1B4_5855at 288.521 kb on - strand, within Pf1N1B4_5855at 288.521 kb on - strand, within Pf1N1B4_5855at 288.523 kb on + strand, within Pf1N1B4_5855at 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.607 kb on + strandat 288.608 kb on - strandat 288.608 kb on - strandat 288.667 kb on + strandat 288.667 kb on + strandat 288.668 kb on - strandat 288.668 kb on - strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.671 kb on + strandat 288.799 kb on + strandat 288.799 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.842 kb on + strandat 288.843 kb on - strandat 288.859 kb on + strandat 289.023 kb on + strand, within Pf1N1B4_5856at 289.023 kb on + strand, within Pf1N1B4_5856at 289.024 kb on - strand, within Pf1N1B4_5856at 289.024 kb on - strand, within Pf1N1B4_5856at 289.209 kb on - strand, within Pf1N1B4_5856at 289.209 kb on - strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.267 kb on + strand, within Pf1N1B4_5856at 289.347 kb on + strand, within Pf1N1B4_5856at 289.413 kb on + strandat 289.596 kb on + strand, within Pf1N1B4_5856at 289.596 kb on + strand, within Pf1N1B4_5856at 289.596 kb on + strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.597 kb on - strand, within Pf1N1B4_5856at 289.600 kb on + strand, within Pf1N1B4_5856at 289.601 kb on - strand, within Pf1N1B4_5856at 289.601 kb on - strand, within Pf1N1B4_5856at 289.731 kb on + strand, within Pf1N1B4_5856at 289.731 kb on + strand, within Pf1N1B4_5856at 289.732 kb on - strand, within Pf1N1B4_5856at 289.732 kb on - strand, within Pf1N1B4_5856at 289.732 kb on - strand, within Pf1N1B4_5856at 289.916 kb on + strandat 289.916 kb on + strandat 289.916 kb on + strandat 290.057 kb on + strandat 290.260 kb on - strand, within Pf1N1B4_5857at 290.340 kb on + strand, within Pf1N1B4_5857at 290.681 kb on - strand, within Pf1N1B4_5857

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
remove
287,852 + Pf1N1B4_5855 0.35 +1.6
287,891 - Pf1N1B4_5855 0.38 +1.4
287,922 + Pf1N1B4_5855 0.40 +1.2
287,950 + Pf1N1B4_5855 0.42 -1.6
287,951 - Pf1N1B4_5855 0.42 +0.9
287,951 - Pf1N1B4_5855 0.42 +0.9
287,951 - Pf1N1B4_5855 0.42 +0.9
288,194 - Pf1N1B4_5855 0.60 -0.6
288,382 + Pf1N1B4_5855 0.74 -1.5
288,394 + Pf1N1B4_5855 0.75 -2.1
288,394 + Pf1N1B4_5855 0.75 -0.1
288,395 - Pf1N1B4_5855 0.75 -1.3
288,395 - Pf1N1B4_5855 0.75 -0.4
288,520 + Pf1N1B4_5855 0.84 +1.0
288,520 + Pf1N1B4_5855 0.84 +1.3
288,520 + Pf1N1B4_5855 0.84 -1.4
288,520 + Pf1N1B4_5855 0.84 +1.4
288,520 + Pf1N1B4_5855 0.84 -1.6
288,520 + Pf1N1B4_5855 0.84 -0.9
288,520 + Pf1N1B4_5855 0.84 -2.4
288,521 - Pf1N1B4_5855 0.85 +0.3
288,521 - Pf1N1B4_5855 0.85 -2.1
288,523 + Pf1N1B4_5855 0.85 -1.6
288,607 + +0.9
288,607 + -1.1
288,607 + -0.5
288,607 + -1.1
288,607 + -2.6
288,607 + +0.9
288,607 + +1.1
288,608 - +2.2
288,608 - -0.9
288,667 + +0.6
288,667 + +0.8
288,668 - +0.1
288,668 - -0.1
288,671 + -1.4
288,671 + -2.2
288,671 + +0.8
288,671 + -1.2
288,671 + +0.3
288,671 + -0.6
288,799 + +0.5
288,799 + -1.4
288,842 + +0.1
288,842 + +0.2
288,842 + +0.4
288,842 + +1.5
288,842 + -0.3
288,842 + -3.4
288,843 - +0.2
288,859 + +0.1
289,023 + Pf1N1B4_5856 0.17 -2.8
289,023 + Pf1N1B4_5856 0.17 -2.4
289,024 - Pf1N1B4_5856 0.17 +0.0
289,024 - Pf1N1B4_5856 0.17 -2.2
289,209 - Pf1N1B4_5856 0.35 -0.9
289,209 - Pf1N1B4_5856 0.35 -1.5
289,267 + Pf1N1B4_5856 0.41 -1.4
289,267 + Pf1N1B4_5856 0.41 +0.7
289,267 + Pf1N1B4_5856 0.41 +1.6
289,347 + Pf1N1B4_5856 0.48 -0.9
289,413 + +2.4
289,596 + Pf1N1B4_5856 0.72 +1.3
289,596 + Pf1N1B4_5856 0.72 +1.8
289,596 + Pf1N1B4_5856 0.72 -0.5
289,597 - Pf1N1B4_5856 0.72 +1.6
289,597 - Pf1N1B4_5856 0.72 -0.9
289,597 - Pf1N1B4_5856 0.72 +0.4
289,597 - Pf1N1B4_5856 0.72 +1.0
289,597 - Pf1N1B4_5856 0.72 +1.9
289,600 + Pf1N1B4_5856 0.73 -0.9
289,601 - Pf1N1B4_5856 0.73 +1.6
289,601 - Pf1N1B4_5856 0.73 +0.8
289,731 + Pf1N1B4_5856 0.85 +0.9
289,731 + Pf1N1B4_5856 0.85 -0.6
289,732 - Pf1N1B4_5856 0.86 -1.1
289,732 - Pf1N1B4_5856 0.86 -0.0
289,732 - Pf1N1B4_5856 0.86 +0.7
289,916 + -0.2
289,916 + -0.2
289,916 + +0.2
290,057 + -0.9
290,260 - Pf1N1B4_5857 0.31 +1.6
290,340 + Pf1N1B4_5857 0.38 +0.0
290,681 - Pf1N1B4_5857 0.71 +1.0

Or see this region's nucleotide sequence