Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3444

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3443 and Pf1N1B4_3444 overlap by 1 nucleotidesPf1N1B4_3444 and Pf1N1B4_3445 are separated by 161 nucleotides Pf1N1B4_3443 - Arginine N-succinyltransferase (EC 2.3.1.109), at 3,838,146 to 3,839,171 _3443 Pf1N1B4_3444 - Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), at 3,839,171 to 3,840,637 _3444 Pf1N1B4_3445 - Succinylarginine dihydrolase (EC 3.5.3.23), at 3,840,799 to 3,842,145 _3445 Position (kb) 3839 3840 3841Strain fitness (log2 ratio) -2 -1 0 1 2at 3838.314 kb on + strand, within Pf1N1B4_3443at 3838.519 kb on + strand, within Pf1N1B4_3443at 3838.777 kb on - strand, within Pf1N1B4_3443at 3839.604 kb on - strand, within Pf1N1B4_3444at 3840.539 kb on + strandat 3840.539 kb on + strandat 3840.540 kb on - strandat 3840.542 kb on + strandat 3840.542 kb on + strandat 3840.554 kb on + strandat 3840.680 kb on - strandat 3840.748 kb on + strandat 3840.756 kb on - strandat 3840.759 kb on + strandat 3840.759 kb on + strandat 3840.851 kb on - strandat 3841.244 kb on + strand, within Pf1N1B4_3445at 3841.354 kb on + strand, within Pf1N1B4_3445at 3841.504 kb on + strand, within Pf1N1B4_3445at 3841.505 kb on - strand, within Pf1N1B4_3445at 3841.589 kb on - strandat 3841.589 kb on - strand, within Pf1N1B4_3445

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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3,838,314 + Pf1N1B4_3443 0.16 -0.0
3,838,519 + Pf1N1B4_3443 0.36 -0.3
3,838,777 - Pf1N1B4_3443 0.62 -1.9
3,839,604 - Pf1N1B4_3444 0.30 -1.5
3,840,539 + -0.2
3,840,539 + +0.7
3,840,540 - -1.4
3,840,542 + -2.3
3,840,542 + -0.1
3,840,554 + +2.4
3,840,680 - +1.3
3,840,748 + +1.1
3,840,756 - -1.3
3,840,759 + +0.2
3,840,759 + -0.8
3,840,851 - +1.1
3,841,244 + Pf1N1B4_3445 0.33 -2.0
3,841,354 + Pf1N1B4_3445 0.41 -2.6
3,841,504 + Pf1N1B4_3445 0.52 -1.2
3,841,505 - Pf1N1B4_3445 0.52 -1.6
3,841,589 - -1.4
3,841,589 - Pf1N1B4_3445 0.59 +0.2

Or see this region's nucleotide sequence