Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3031

Experiment: Minimal media pH9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media pH9
3,408,894	+		Pf1N1B4_3030	0.57	+0.5
3,408,894	+		Pf1N1B4_3030	0.57	-1.2
3,408,894	+		Pf1N1B4_3030	0.57	-1.3
3,408,895	-		Pf1N1B4_3030	0.57	-2.6
3,408,921	-		Pf1N1B4_3030	0.60	-0.6
3,408,936	+		Pf1N1B4_3030	0.61	+0.2
3,408,972	+		Pf1N1B4_3030	0.65	+0.5
3,408,972	+		Pf1N1B4_3030	0.65	-0.1
3,408,973	-		Pf1N1B4_3030	0.65	+0.4
3,408,973	-		Pf1N1B4_3030	0.65	-0.4
3,408,973	-		Pf1N1B4_3030	0.65	+0.9
3,408,973	-		Pf1N1B4_3030	0.65	-0.8
3,408,973	-		Pf1N1B4_3030	0.65	-0.2
3,409,333	-				-1.1
3,409,333	-				-1.5
3,409,333	-				+0.9
3,409,333	-				-0.6
3,409,333	-				-2.1
3,409,333	-				-1.2
3,409,334	+				-1.6
3,409,334	+				-0.1
3,409,334	+				-1.7
3,409,335	-				+0.6
3,409,335	-				-0.8
3,409,444	-				-0.4
3,409,455	+				+1.0
3,409,455	+				+0.2
3,409,455	+				+1.0
3,409,455	+				-0.6
3,409,456	-				+0.7
3,409,456	-				+0.7
3,409,456	-				-0.2
3,409,463	-				+0.1
3,409,463	-				-0.3
3,409,466	+				+0.4
3,409,466	+				-1.0
3,409,474	+				-0.8
3,409,495	+				-0.1
3,409,495	+				+0.1
3,409,495	+				-1.6
3,409,496	-				-1.3
3,409,496	-				+0.8
3,409,551	-				-2.0
3,409,603	+				+0.2
3,409,665	+				+0.3
3,409,665	+				+0.6
3,409,665	+				+0.3
3,409,665	+				+0.4
3,409,665	+				+0.6
3,409,665	+				-0.2
3,409,665	+				+1.5
3,409,666	-				+0.1
3,409,666	-				-1.6
3,409,666	-				+0.3
3,409,713	+				+1.2
3,409,713	+				+2.0
3,409,713	+				+0.8
3,409,713	+				-2.0
3,409,713	+				+0.2
3,409,714	-				+2.2
3,409,714	-				-0.9
3,409,714	-				-0.6
3,409,752	+				-1.0
3,409,752	+				-1.3
3,409,752	+				+0.8
3,409,752	+				-2.0
3,409,752	+				+0.4
3,409,764	+				+0.6
3,409,764	+				+0.5
3,409,764	+				-0.3
3,409,764	+				+1.7
3,409,764	+				-1.0
3,409,764	+				+0.0
3,409,765	-				+0.4
3,409,766	+				-0.2
3,409,766	+				+0.2
3,409,766	+				+1.4
3,409,767	-				-0.2
3,409,848	+		Pf1N1B4_3031	0.10	+1.5
3,409,848	+		Pf1N1B4_3031	0.10	+1.1
3,409,848	+		Pf1N1B4_3031	0.10	-0.5
3,409,848	+		Pf1N1B4_3031	0.10	+0.6
3,409,848	+		Pf1N1B4_3031	0.10	+1.3
3,409,848	+		Pf1N1B4_3031	0.10	+1.2
3,409,849	-		Pf1N1B4_3031	0.10	-1.4
3,409,849	-		Pf1N1B4_3031	0.10	+0.1
3,409,849	-		Pf1N1B4_3031	0.10	+2.0
3,409,849	-		Pf1N1B4_3031	0.10	+0.6
3,409,849	-		Pf1N1B4_3031	0.10	+1.1
3,409,849	-		Pf1N1B4_3031	0.10	-0.4
3,409,849	-		Pf1N1B4_3031	0.10	-1.1
3,409,872	+		Pf1N1B4_3031	0.11	-0.1
3,409,872	+		Pf1N1B4_3031	0.11	-0.0
3,409,872	+		Pf1N1B4_3031	0.11	+0.0
3,409,872	+		Pf1N1B4_3031	0.11	+1.7
3,409,872	+		Pf1N1B4_3031	0.11	-2.2
3,409,873	-		Pf1N1B4_3031	0.11	+0.3
3,409,873	-		Pf1N1B4_3031	0.11	+1.2
3,409,873	-		Pf1N1B4_3031	0.11	+2.6
3,409,873	-		Pf1N1B4_3031	0.11	+0.9
3,409,992	+		Pf1N1B4_3031	0.16	-2.3
3,409,992	+		Pf1N1B4_3031	0.16	-2.6
3,409,992	+				-0.2
3,409,992	+		Pf1N1B4_3031	0.16	-1.6
3,409,992	+		Pf1N1B4_3031	0.16	-1.2
3,409,993	-				+0.6
3,409,993	-				-0.4
3,409,993	-		Pf1N1B4_3031	0.16	-1.4
3,409,994	+		Pf1N1B4_3031	0.16	+1.6
3,409,994	+		Pf1N1B4_3031	0.16	-1.7
3,409,995	-		Pf1N1B4_3031	0.16	-0.7
3,410,123	-		Pf1N1B4_3031	0.20	-2.2
3,410,181	-		Pf1N1B4_3031	0.23	+1.0
3,410,222	+		Pf1N1B4_3031	0.24	-2.3
3,410,222	+		Pf1N1B4_3031	0.24	+0.6
3,410,223	-		Pf1N1B4_3031	0.24	+0.8
3,410,223	-		Pf1N1B4_3031	0.24	-0.2
3,410,223	-		Pf1N1B4_3031	0.24	-1.2
3,410,281	+		Pf1N1B4_3031	0.26	+0.6
3,410,282	-		Pf1N1B4_3031	0.26	-3.4
3,410,446	+		Pf1N1B4_3031	0.32	-0.7
3,410,447	-		Pf1N1B4_3031	0.32	-0.3
3,410,456	-		Pf1N1B4_3031	0.33	-2.7
3,410,489	-		Pf1N1B4_3031	0.34	-1.9
3,410,538	+		Pf1N1B4_3031	0.36	-1.0
3,410,538	+		Pf1N1B4_3031	0.36	-1.7
3,410,539	-		Pf1N1B4_3031	0.36	-1.7
3,410,539	-		Pf1N1B4_3031	0.36	-2.1
3,410,605	+		Pf1N1B4_3031	0.38	+0.7
3,410,605	+		Pf1N1B4_3031	0.38	-0.0
3,410,606	-		Pf1N1B4_3031	0.38	+0.2
3,410,634	+		Pf1N1B4_3031	0.39	-0.3
3,410,634	+		Pf1N1B4_3031	0.39	-1.4
3,410,634	+		Pf1N1B4_3031	0.39	+0.4
3,410,634	+		Pf1N1B4_3031	0.39	+3.5
3,410,634	+		Pf1N1B4_3031	0.39	+0.2
3,410,634	+		Pf1N1B4_3031	0.39	-1.7
3,410,634	+		Pf1N1B4_3031	0.39	+1.8
3,410,635	-		Pf1N1B4_3031	0.39	+0.5
3,410,635	-		Pf1N1B4_3031	0.39	-0.3
3,410,635	-		Pf1N1B4_3031	0.39	+0.1
3,410,654	+		Pf1N1B4_3031	0.40	+1.9
3,410,654	+		Pf1N1B4_3031	0.40	+0.6
3,410,654	+		Pf1N1B4_3031	0.40	-1.6
3,410,686	-		Pf1N1B4_3031	0.41	-2.4
3,410,796	+		Pf1N1B4_3031	0.45	+0.8
3,410,797	-		Pf1N1B4_3031	0.45	+0.1
3,410,797	-		Pf1N1B4_3031	0.45	-1.2
3,410,797	-		Pf1N1B4_3031	0.45	-0.1
3,410,833	-		Pf1N1B4_3031	0.46	+0.5
3,410,872	-		Pf1N1B4_3031	0.48	+0.1
3,410,890	+		Pf1N1B4_3031	0.49	-2.0
3,410,891	-		Pf1N1B4_3031	0.49	-0.6
3,410,891	-		Pf1N1B4_3031	0.49	-0.2
3,410,891	-		Pf1N1B4_3031	0.49	+1.5
3,410,891	-		Pf1N1B4_3031	0.49	-1.0
3,410,891	-		Pf1N1B4_3031	0.49	-1.0
3,410,891	-		Pf1N1B4_3031	0.49	-0.2
3,410,891	-		Pf1N1B4_3031	0.49	-2.1
3,410,891	-		Pf1N1B4_3031	0.49	+1.8
3,410,923	+				+2.0
3,410,924	-		Pf1N1B4_3031	0.50	-0.3
3,410,924	-		Pf1N1B4_3031	0.50	-2.3
3,410,934	+		Pf1N1B4_3031	0.50	+1.4
3,410,934	+		Pf1N1B4_3031	0.50	-0.2
3,410,934	+		Pf1N1B4_3031	0.50	+0.9
3,410,934	+		Pf1N1B4_3031	0.50	-0.4
3,410,934	+		Pf1N1B4_3031	0.50	-2.5
3,410,935	-		Pf1N1B4_3031	0.50	+0.4
3,410,935	-		Pf1N1B4_3031	0.50	+2.2
3,410,935	-		Pf1N1B4_3031	0.50	+0.7
3,410,935	-		Pf1N1B4_3031	0.50	+0.5
3,410,935	-		Pf1N1B4_3031	0.50	-1.4
3,410,935	-		Pf1N1B4_3031	0.50	+1.0
3,410,962	+		Pf1N1B4_3031	0.51	-0.4
3,410,963	-		Pf1N1B4_3031	0.51	+0.6
3,410,974	-		Pf1N1B4_3031	0.52	-2.8
3,410,981	+				+2.8
3,410,981	+		Pf1N1B4_3031	0.52	-0.6
3,410,981	+		Pf1N1B4_3031	0.52	+0.3
3,410,982	-		Pf1N1B4_3031	0.52	+0.0
3,410,982	-		Pf1N1B4_3031	0.52	-0.8
3,410,982	-		Pf1N1B4_3031	0.52	+1.5
3,410,982	-		Pf1N1B4_3031	0.52	+1.3
3,411,224	+		Pf1N1B4_3031	0.61	+1.3
3,411,224	+		Pf1N1B4_3031	0.61	+1.2
3,411,224	+		Pf1N1B4_3031	0.61	+0.3
3,411,227	+		Pf1N1B4_3031	0.61	-0.8
3,411,227	+		Pf1N1B4_3031	0.61	-0.3
3,411,227	+		Pf1N1B4_3031	0.61	+2.0
3,411,304	-		Pf1N1B4_3031	0.64	+1.4
3,411,347	+		Pf1N1B4_3031	0.65	-0.3
3,411,347	+		Pf1N1B4_3031	0.65	-2.5
3,411,348	-		Pf1N1B4_3031	0.65	-2.6
3,411,503	+		Pf1N1B4_3031	0.71	+3.2
3,411,503	+		Pf1N1B4_3031	0.71	-2.4
3,411,503	+		Pf1N1B4_3031	0.71	+1.0
3,411,503	+		Pf1N1B4_3031	0.71	-0.2
3,411,503	+				+1.8
3,411,503	+		Pf1N1B4_3031	0.71	-1.0
3,411,503	+		Pf1N1B4_3031	0.71	+0.5
3,411,503	+		Pf1N1B4_3031	0.71	+1.5
3,411,503	+		Pf1N1B4_3031	0.71	-1.3
3,411,503	+		Pf1N1B4_3031	0.71	-0.5
3,411,504	-		Pf1N1B4_3031	0.71	+0.5
3,411,504	-		Pf1N1B4_3031	0.71	-1.2
3,411,504	-		Pf1N1B4_3031	0.71	+2.0
3,411,504	-		Pf1N1B4_3031	0.71	-0.5
3,411,504	-		Pf1N1B4_3031	0.71	+1.1
3,411,504	-		Pf1N1B4_3031	0.71	-1.9
3,411,504	-		Pf1N1B4_3031	0.71	-0.7
3,411,504	-		Pf1N1B4_3031	0.71	+1.9
3,411,504	-		Pf1N1B4_3031	0.71	+0.2
3,411,683	-		Pf1N1B4_3031	0.78	-1.7
3,411,683	-		Pf1N1B4_3031	0.78	+0.7
3,411,711	+		Pf1N1B4_3031	0.79	-0.4
3,411,711	+		Pf1N1B4_3031	0.79	+0.1
3,411,711	+		Pf1N1B4_3031	0.79	+0.6
3,411,711	+		Pf1N1B4_3031	0.79	-0.2
3,411,711	+				-0.6
3,411,711	+		Pf1N1B4_3031	0.79	-0.5
3,411,711	+		Pf1N1B4_3031	0.79	-1.6
3,411,712	-		Pf1N1B4_3031	0.79	+0.6
3,411,712	-		Pf1N1B4_3031	0.79	+0.1
3,411,712	-		Pf1N1B4_3031	0.79	-3.5
3,411,712	-		Pf1N1B4_3031	0.79	-0.7
3,411,713	+		Pf1N1B4_3031	0.79	-2.2
3,411,740	+		Pf1N1B4_3031	0.80	-2.7
3,411,740	+		Pf1N1B4_3031	0.80	+0.3
3,411,741	-		Pf1N1B4_3031	0.80	-0.6
3,411,741	-		Pf1N1B4_3031	0.80	+1.4
3,411,743	+				+1.4
3,411,743	+		Pf1N1B4_3031	0.80	-0.3
3,411,744	-		Pf1N1B4_3031	0.80	+0.6
3,411,744	-		Pf1N1B4_3031	0.80	-0.3
3,411,775	+		Pf1N1B4_3031	0.81	-0.4
3,411,815	+		Pf1N1B4_3031	0.82	-1.2
3,411,819	+		Pf1N1B4_3031	0.83	-0.6
3,411,819	+		Pf1N1B4_3031	0.83	-1.0
3,411,820	-		Pf1N1B4_3031	0.83	-1.3
3,411,820	-		Pf1N1B4_3031	0.83	-1.7
3,411,820	-		Pf1N1B4_3031	0.83	+2.2
3,411,820	-		Pf1N1B4_3031	0.83	+0.3
3,411,820	-		Pf1N1B4_3031	0.83	-0.6
3,411,820	-		Pf1N1B4_3031	0.83	+1.2
3,411,820	-		Pf1N1B4_3031	0.83	-2.1
3,411,859	-				+1.6
3,411,889	+		Pf1N1B4_3031	0.85	+1.3
3,411,889	+		Pf1N1B4_3031	0.85	+1.1
3,411,890	-				-1.2
3,411,890	-		Pf1N1B4_3031	0.85	+0.3
3,411,890	-		Pf1N1B4_3031	0.85	-1.2
3,411,910	+		Pf1N1B4_3031	0.86	-0.8
3,411,911	-		Pf1N1B4_3031	0.86	+1.6
3,411,966	-		Pf1N1B4_3031	0.88	+0.9
3,411,997	+		Pf1N1B4_3031	0.89	-0.2
3,411,998	-		Pf1N1B4_3031	0.89	+1.0
3,412,012	+		Pf1N1B4_3031	0.90	+1.2
3,412,013	-		Pf1N1B4_3031	0.90	+0.8
3,412,022	+				-1.4
3,412,087	+				-0.0
3,412,087	+				+2.3
3,412,087	+				-0.4
3,412,087	+				+0.1
3,412,088	-				+0.4
3,412,088	-				-0.6
3,412,088	-				+0.5
3,412,107	+				-0.9
3,412,107	+				-0.4
3,412,107	+				-0.6
3,412,107	+				+0.8
3,412,107	+				+0.2
3,412,107	+				-0.1
3,412,107	+				+0.2
3,412,107	+				-2.3
3,412,108	-				+0.8
3,412,108	-				-0.4
3,412,108	-				-1.5
3,412,108	-				-0.9
3,412,108	-				-2.1
3,412,108	-				-1.5
3,412,108	-				+2.2
3,412,108	-				+2.2
3,412,108	-				-0.1
3,412,110	+				+1.1
3,412,151	+				-1.5
3,412,161	+				+2.3
3,412,161	+				-1.5
3,412,161	+				+0.6
3,412,162	-				+0.4
3,412,162	-				+0.8
3,412,277	-				+0.4
3,412,293	+				+0.9
3,412,296	+				-1.0
3,412,296	+				+0.5
3,412,297	-				-2.1
3,412,297	-				+1.2
3,412,297	-				-0.1
3,412,307	-				+0.3
3,412,309	+				-0.1
3,412,310	-				+0.4
3,412,383	+				+2.3
3,412,383	+				+1.1
3,412,384	-				-0.1
3,412,386	+				-1.3
3,412,386	+				+0.5
3,412,577	+				+0.6
3,412,578	-				-0.7
3,412,578	-				-1.9
3,412,605	+				-0.2
3,412,606	-				+1.9
3,412,795	+		Pf1N1B4_3032	0.34	-0.2
3,412,795	+		Pf1N1B4_3032	0.34	+1.8
3,412,795	+				+0.8
3,412,796	-		Pf1N1B4_3032	0.34	+0.9
3,412,828	+		Pf1N1B4_3032	0.39	-0.0
3,412,828	+		Pf1N1B4_3032	0.39	-0.0
3,412,828	+		Pf1N1B4_3032	0.39	+0.5
3,412,828	+		Pf1N1B4_3032	0.39	+0.8
3,412,828	+		Pf1N1B4_3032	0.39	+1.6
3,412,828	+		Pf1N1B4_3032	0.39	-0.9
3,412,828	+		Pf1N1B4_3032	0.39	-1.3
3,412,828	+		Pf1N1B4_3032	0.39	-0.6
3,412,829	-		Pf1N1B4_3032	0.39	+0.8
3,412,829	-		Pf1N1B4_3032	0.39	+1.1
3,412,829	-		Pf1N1B4_3032	0.39	-1.0
3,412,829	-		Pf1N1B4_3032	0.39	+0.6
3,412,829	-		Pf1N1B4_3032	0.39	+0.8
3,412,829	-		Pf1N1B4_3032	0.39	+0.3
3,412,837	+		Pf1N1B4_3032	0.40	+0.4
3,413,134	+		Pf1N1B4_3032	0.81	-1.4
3,413,134	+		Pf1N1B4_3032	0.81	+0.0
3,413,135	-		Pf1N1B4_3032	0.81	-0.6
3,413,135	-		Pf1N1B4_3032	0.81	+1.3
3,413,135	-		Pf1N1B4_3032	0.81	+1.1
3,413,135	-		Pf1N1B4_3032	0.81	-2.2
3,413,185	+		Pf1N1B4_3032	0.88	-2.0
3,413,185	+		Pf1N1B4_3032	0.88	-0.4
3,413,269	+				+1.5
3,413,270	-				+0.8