Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1337

Experiment: Minimal media pH9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1335 and Pf1N1B4_1336 are separated by 66 nucleotidesPf1N1B4_1336 and Pf1N1B4_1337 are separated by 84 nucleotidesPf1N1B4_1337 and Pf1N1B4_1338 are separated by 196 nucleotides Pf1N1B4_1335 - Copper metallochaperone, bacterial analog of Cox17 protein, at 1,529,876 to 1,530,355 _1335 Pf1N1B4_1336 - Putative multicopper oxidases, at 1,530,422 to 1,530,826 _1336 Pf1N1B4_1337 - Outer membrane receptor proteins, mostly Fe transport, at 1,530,911 to 1,533,028 _1337 Pf1N1B4_1338 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 1,533,225 to 1,534,601 _1338 Position (kb) 1530 1531 1532 1533 1534Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.942 kb on + strand, within Pf1N1B4_1335at 1529.943 kb on - strand, within Pf1N1B4_1335at 1529.943 kb on - strand, within Pf1N1B4_1335at 1529.943 kb on - strand, within Pf1N1B4_1335at 1530.017 kb on + strand, within Pf1N1B4_1335at 1530.018 kb on - strand, within Pf1N1B4_1335at 1530.195 kb on - strand, within Pf1N1B4_1335at 1530.195 kb on - strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.201 kb on + strand, within Pf1N1B4_1335at 1530.202 kb on - strandat 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.202 kb on - strand, within Pf1N1B4_1335at 1530.340 kb on + strandat 1530.340 kb on + strandat 1530.340 kb on + strandat 1530.340 kb on + strandat 1530.341 kb on - strandat 1530.537 kb on + strand, within Pf1N1B4_1336at 1530.537 kb on + strand, within Pf1N1B4_1336at 1530.538 kb on - strand, within Pf1N1B4_1336at 1530.538 kb on - strand, within Pf1N1B4_1336at 1530.824 kb on + strandat 1530.888 kb on - strandat 1531.175 kb on + strand, within Pf1N1B4_1337at 1531.176 kb on - strand, within Pf1N1B4_1337at 1531.176 kb on - strand, within Pf1N1B4_1337at 1531.236 kb on + strand, within Pf1N1B4_1337at 1531.267 kb on + strand, within Pf1N1B4_1337at 1531.268 kb on - strand, within Pf1N1B4_1337at 1531.332 kb on - strand, within Pf1N1B4_1337at 1531.332 kb on - strand, within Pf1N1B4_1337at 1531.350 kb on - strand, within Pf1N1B4_1337at 1531.350 kb on - strand, within Pf1N1B4_1337at 1531.544 kb on + strand, within Pf1N1B4_1337at 1531.545 kb on - strand, within Pf1N1B4_1337at 1531.583 kb on + strand, within Pf1N1B4_1337at 1531.583 kb on + strand, within Pf1N1B4_1337at 1531.584 kb on - strand, within Pf1N1B4_1337at 1531.584 kb on - strand, within Pf1N1B4_1337at 1531.584 kb on - strand, within Pf1N1B4_1337at 1531.584 kb on - strand, within Pf1N1B4_1337at 1531.584 kb on - strand, within Pf1N1B4_1337at 1531.823 kb on + strand, within Pf1N1B4_1337at 1531.824 kb on - strand, within Pf1N1B4_1337at 1531.826 kb on + strand, within Pf1N1B4_1337at 1531.826 kb on + strand, within Pf1N1B4_1337at 1531.826 kb on + strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strandat 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.827 kb on - strand, within Pf1N1B4_1337at 1531.832 kb on + strand, within Pf1N1B4_1337at 1531.832 kb on + strand, within Pf1N1B4_1337at 1531.832 kb on + strand, within Pf1N1B4_1337at 1531.833 kb on - strand, within Pf1N1B4_1337at 1531.833 kb on - strand, within Pf1N1B4_1337at 1531.833 kb on - strand, within Pf1N1B4_1337at 1531.833 kb on - strand, within Pf1N1B4_1337at 1531.856 kb on + strand, within Pf1N1B4_1337at 1531.856 kb on + strand, within Pf1N1B4_1337at 1531.856 kb on + strand, within Pf1N1B4_1337at 1531.856 kb on + strand, within Pf1N1B4_1337at 1531.856 kb on + strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1531.857 kb on - strand, within Pf1N1B4_1337at 1532.040 kb on - strand, within Pf1N1B4_1337at 1532.040 kb on - strand, within Pf1N1B4_1337at 1532.040 kb on - strand, within Pf1N1B4_1337at 1532.040 kb on - strand, within Pf1N1B4_1337at 1532.040 kb on - strand, within Pf1N1B4_1337at 1532.050 kb on - strand, within Pf1N1B4_1337at 1532.081 kb on + strand, within Pf1N1B4_1337at 1532.082 kb on - strand, within Pf1N1B4_1337at 1532.082 kb on - strand, within Pf1N1B4_1337at 1532.082 kb on - strand, within Pf1N1B4_1337at 1532.082 kb on - strand, within Pf1N1B4_1337at 1532.438 kb on + strand, within Pf1N1B4_1337at 1532.438 kb on + strand, within Pf1N1B4_1337at 1532.438 kb on + strand, within Pf1N1B4_1337at 1532.439 kb on - strand, within Pf1N1B4_1337at 1532.439 kb on - strandat 1532.439 kb on - strand, within Pf1N1B4_1337at 1532.439 kb on - strand, within Pf1N1B4_1337at 1532.474 kb on + strand, within Pf1N1B4_1337at 1532.474 kb on + strand, within Pf1N1B4_1337at 1532.474 kb on + strand, within Pf1N1B4_1337at 1532.475 kb on - strand, within Pf1N1B4_1337at 1532.475 kb on - strand, within Pf1N1B4_1337at 1532.475 kb on - strand, within Pf1N1B4_1337at 1532.495 kb on + strand, within Pf1N1B4_1337at 1532.495 kb on + strand, within Pf1N1B4_1337at 1532.495 kb on + strand, within Pf1N1B4_1337at 1532.496 kb on - strand, within Pf1N1B4_1337at 1532.496 kb on - strand, within Pf1N1B4_1337at 1532.496 kb on - strand, within Pf1N1B4_1337at 1532.496 kb on - strand, within Pf1N1B4_1337at 1532.510 kb on + strand, within Pf1N1B4_1337at 1532.510 kb on + strand, within Pf1N1B4_1337at 1532.510 kb on + strand, within Pf1N1B4_1337at 1532.591 kb on + strand, within Pf1N1B4_1337at 1532.592 kb on - strand, within Pf1N1B4_1337at 1532.592 kb on - strandat 1532.592 kb on - strand, within Pf1N1B4_1337at 1532.592 kb on - strand, within Pf1N1B4_1337at 1532.592 kb on - strand, within Pf1N1B4_1337at 1532.634 kb on - strand, within Pf1N1B4_1337at 1532.711 kb on + strand, within Pf1N1B4_1337at 1532.711 kb on + strand, within Pf1N1B4_1337at 1532.711 kb on + strand, within Pf1N1B4_1337at 1532.712 kb on - strand, within Pf1N1B4_1337at 1532.913 kb on - strandat 1533.016 kb on + strandat 1533.017 kb on - strandat 1533.017 kb on - strandat 1533.017 kb on - strandat 1533.027 kb on - strandat 1533.184 kb on + strandat 1533.184 kb on + strandat 1533.185 kb on - strandat 1533.185 kb on - strandat 1533.195 kb on + strandat 1533.195 kb on + strandat 1533.195 kb on + strandat 1533.195 kb on + strandat 1533.195 kb on + strandat 1533.196 kb on - strandat 1533.249 kb on + strandat 1533.276 kb on + strandat 1533.277 kb on - strandat 1533.277 kb on - strandat 1533.277 kb on - strandat 1533.277 kb on - strandat 1533.277 kb on - strandat 1533.334 kb on - strandat 1533.334 kb on - strandat 1533.334 kb on - strandat 1533.334 kb on - strandat 1533.334 kb on - strandat 1533.334 kb on - strandat 1533.366 kb on + strand, within Pf1N1B4_1338at 1533.366 kb on + strand, within Pf1N1B4_1338at 1533.468 kb on + strand, within Pf1N1B4_1338at 1533.469 kb on - strand, within Pf1N1B4_1338at 1533.469 kb on - strand, within Pf1N1B4_1338at 1533.469 kb on - strand, within Pf1N1B4_1338at 1533.469 kb on - strand, within Pf1N1B4_1338at 1533.553 kb on - strand, within Pf1N1B4_1338at 1533.658 kb on + strand, within Pf1N1B4_1338at 1533.658 kb on + strand, within Pf1N1B4_1338at 1533.659 kb on - strand, within Pf1N1B4_1338at 1533.659 kb on - strand, within Pf1N1B4_1338at 1533.659 kb on - strand, within Pf1N1B4_1338at 1533.659 kb on - strand, within Pf1N1B4_1338at 1533.876 kb on + strand, within Pf1N1B4_1338at 1533.876 kb on + strand, within Pf1N1B4_1338at 1533.876 kb on + strand, within Pf1N1B4_1338

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
remove
1,529,942 + Pf1N1B4_1335 0.14 -0.2
1,529,942 + Pf1N1B4_1335 0.14 -2.2
1,529,942 + Pf1N1B4_1335 0.14 +1.6
1,529,942 + Pf1N1B4_1335 0.14 -0.1
1,529,942 + Pf1N1B4_1335 0.14 +0.2
1,529,943 - Pf1N1B4_1335 0.14 +3.6
1,529,943 - Pf1N1B4_1335 0.14 +3.8
1,529,943 - Pf1N1B4_1335 0.14 +2.7
1,530,017 + Pf1N1B4_1335 0.29 +0.6
1,530,018 - Pf1N1B4_1335 0.30 +3.5
1,530,195 - Pf1N1B4_1335 0.66 +4.1
1,530,195 - Pf1N1B4_1335 0.66 +2.9
1,530,201 + Pf1N1B4_1335 0.68 +0.9
1,530,201 + Pf1N1B4_1335 0.68 -0.4
1,530,201 + Pf1N1B4_1335 0.68 +0.3
1,530,201 + Pf1N1B4_1335 0.68 +0.9
1,530,201 + Pf1N1B4_1335 0.68 +1.5
1,530,202 - +3.7
1,530,202 - Pf1N1B4_1335 0.68 +2.1
1,530,202 - Pf1N1B4_1335 0.68 +3.5
1,530,202 - Pf1N1B4_1335 0.68 +3.3
1,530,202 - Pf1N1B4_1335 0.68 +3.9
1,530,202 - Pf1N1B4_1335 0.68 +3.4
1,530,340 + -1.3
1,530,340 + -0.3
1,530,340 + -0.3
1,530,340 + -0.7
1,530,341 - -2.0
1,530,537 + Pf1N1B4_1336 0.28 +1.8
1,530,537 + Pf1N1B4_1336 0.28 +2.7
1,530,538 - Pf1N1B4_1336 0.29 +1.4
1,530,538 - Pf1N1B4_1336 0.29 +1.6
1,530,824 + -1.6
1,530,888 - +3.2
1,531,175 + Pf1N1B4_1337 0.12 +2.1
1,531,176 - Pf1N1B4_1337 0.13 +2.2
1,531,176 - Pf1N1B4_1337 0.13 +2.8
1,531,236 + Pf1N1B4_1337 0.15 +0.4
1,531,267 + Pf1N1B4_1337 0.17 -1.7
1,531,268 - Pf1N1B4_1337 0.17 +2.5
1,531,332 - Pf1N1B4_1337 0.20 +2.9
1,531,332 - Pf1N1B4_1337 0.20 +3.2
1,531,350 - Pf1N1B4_1337 0.21 +2.4
1,531,350 - Pf1N1B4_1337 0.21 +2.6
1,531,544 + Pf1N1B4_1337 0.30 +0.7
1,531,545 - Pf1N1B4_1337 0.30 +2.1
1,531,583 + Pf1N1B4_1337 0.32 -0.7
1,531,583 + Pf1N1B4_1337 0.32 +1.8
1,531,584 - Pf1N1B4_1337 0.32 +1.1
1,531,584 - Pf1N1B4_1337 0.32 +2.8
1,531,584 - Pf1N1B4_1337 0.32 +2.7
1,531,584 - Pf1N1B4_1337 0.32 +2.6
1,531,584 - Pf1N1B4_1337 0.32 +1.8
1,531,823 + Pf1N1B4_1337 0.43 +1.8
1,531,824 - Pf1N1B4_1337 0.43 +2.4
1,531,826 + Pf1N1B4_1337 0.43 -0.7
1,531,826 + Pf1N1B4_1337 0.43 -1.8
1,531,826 + Pf1N1B4_1337 0.43 +1.5
1,531,827 - Pf1N1B4_1337 0.43 +2.6
1,531,827 - Pf1N1B4_1337 0.43 +3.3
1,531,827 - Pf1N1B4_1337 0.43 +2.3
1,531,827 - Pf1N1B4_1337 0.43 +2.4
1,531,827 - +1.6
1,531,827 - Pf1N1B4_1337 0.43 +1.1
1,531,827 - Pf1N1B4_1337 0.43 +2.9
1,531,827 - Pf1N1B4_1337 0.43 +1.0
1,531,827 - Pf1N1B4_1337 0.43 +2.3
1,531,827 - Pf1N1B4_1337 0.43 +2.8
1,531,827 - Pf1N1B4_1337 0.43 +2.0
1,531,832 + Pf1N1B4_1337 0.43 -1.8
1,531,832 + Pf1N1B4_1337 0.43 -0.8
1,531,832 + Pf1N1B4_1337 0.43 +1.2
1,531,833 - Pf1N1B4_1337 0.44 +2.3
1,531,833 - Pf1N1B4_1337 0.44 +2.8
1,531,833 - Pf1N1B4_1337 0.44 +3.1
1,531,833 - Pf1N1B4_1337 0.44 +3.5
1,531,856 + Pf1N1B4_1337 0.45 +1.8
1,531,856 + Pf1N1B4_1337 0.45 -0.4
1,531,856 + Pf1N1B4_1337 0.45 +0.7
1,531,856 + Pf1N1B4_1337 0.45 +0.8
1,531,856 + Pf1N1B4_1337 0.45 +2.2
1,531,857 - Pf1N1B4_1337 0.45 -0.1
1,531,857 - Pf1N1B4_1337 0.45 +3.1
1,531,857 - Pf1N1B4_1337 0.45 +3.0
1,531,857 - Pf1N1B4_1337 0.45 +1.7
1,531,857 - Pf1N1B4_1337 0.45 +2.3
1,531,857 - Pf1N1B4_1337 0.45 +3.7
1,531,857 - Pf1N1B4_1337 0.45 +2.1
1,531,857 - Pf1N1B4_1337 0.45 +2.9
1,531,857 - Pf1N1B4_1337 0.45 +2.8
1,531,857 - Pf1N1B4_1337 0.45 +2.3
1,531,857 - Pf1N1B4_1337 0.45 -1.7
1,531,857 - Pf1N1B4_1337 0.45 +1.6
1,531,857 - Pf1N1B4_1337 0.45 +1.7
1,532,040 - Pf1N1B4_1337 0.53 +2.9
1,532,040 - Pf1N1B4_1337 0.53 +2.5
1,532,040 - Pf1N1B4_1337 0.53 +2.1
1,532,040 - Pf1N1B4_1337 0.53 +2.4
1,532,040 - Pf1N1B4_1337 0.53 +1.5
1,532,050 - Pf1N1B4_1337 0.54 +2.8
1,532,081 + Pf1N1B4_1337 0.55 -1.7
1,532,082 - Pf1N1B4_1337 0.55 +0.5
1,532,082 - Pf1N1B4_1337 0.55 +2.5
1,532,082 - Pf1N1B4_1337 0.55 +1.7
1,532,082 - Pf1N1B4_1337 0.55 +2.2
1,532,438 + Pf1N1B4_1337 0.72 +1.0
1,532,438 + Pf1N1B4_1337 0.72 -0.6
1,532,438 + Pf1N1B4_1337 0.72 +1.3
1,532,439 - Pf1N1B4_1337 0.72 +2.9
1,532,439 - +2.3
1,532,439 - Pf1N1B4_1337 0.72 +2.2
1,532,439 - Pf1N1B4_1337 0.72 +2.9
1,532,474 + Pf1N1B4_1337 0.74 -1.4
1,532,474 + Pf1N1B4_1337 0.74 -0.1
1,532,474 + Pf1N1B4_1337 0.74 +0.9
1,532,475 - Pf1N1B4_1337 0.74 +3.7
1,532,475 - Pf1N1B4_1337 0.74 +2.9
1,532,475 - Pf1N1B4_1337 0.74 +2.6
1,532,495 + Pf1N1B4_1337 0.75 -1.1
1,532,495 + Pf1N1B4_1337 0.75 -0.4
1,532,495 + Pf1N1B4_1337 0.75 -0.2
1,532,496 - Pf1N1B4_1337 0.75 +1.1
1,532,496 - Pf1N1B4_1337 0.75 -0.1
1,532,496 - Pf1N1B4_1337 0.75 +1.9
1,532,496 - Pf1N1B4_1337 0.75 +3.4
1,532,510 + Pf1N1B4_1337 0.75 -0.0
1,532,510 + Pf1N1B4_1337 0.75 +0.5
1,532,510 + Pf1N1B4_1337 0.75 +2.1
1,532,591 + Pf1N1B4_1337 0.79 +0.2
1,532,592 - Pf1N1B4_1337 0.79 +2.3
1,532,592 - +3.3
1,532,592 - Pf1N1B4_1337 0.79 +3.1
1,532,592 - Pf1N1B4_1337 0.79 +0.8
1,532,592 - Pf1N1B4_1337 0.79 +1.1
1,532,634 - Pf1N1B4_1337 0.81 +2.2
1,532,711 + Pf1N1B4_1337 0.85 -1.6
1,532,711 + Pf1N1B4_1337 0.85 +1.4
1,532,711 + Pf1N1B4_1337 0.85 +0.6
1,532,712 - Pf1N1B4_1337 0.85 +0.6
1,532,913 - +0.9
1,533,016 + -0.6
1,533,017 - +2.0
1,533,017 - +2.0
1,533,017 - +2.0
1,533,027 - +3.2
1,533,184 + -1.3
1,533,184 + -1.7
1,533,185 - +1.2
1,533,185 - -0.8
1,533,195 + -2.6
1,533,195 + -1.1
1,533,195 + -1.1
1,533,195 + -0.3
1,533,195 + +0.9
1,533,196 - -0.7
1,533,249 + +0.4
1,533,276 + +0.6
1,533,277 - -0.5
1,533,277 - +0.8
1,533,277 - +0.6
1,533,277 - -2.5
1,533,277 - +0.0
1,533,334 - +1.8
1,533,334 - +0.8
1,533,334 - +0.4
1,533,334 - -0.2
1,533,334 - -0.6
1,533,334 - +0.6
1,533,366 + Pf1N1B4_1338 0.10 -2.2
1,533,366 + Pf1N1B4_1338 0.10 -0.5
1,533,468 + Pf1N1B4_1338 0.18 +1.7
1,533,469 - Pf1N1B4_1338 0.18 -0.7
1,533,469 - Pf1N1B4_1338 0.18 +1.3
1,533,469 - Pf1N1B4_1338 0.18 +0.4
1,533,469 - Pf1N1B4_1338 0.18 +1.4
1,533,553 - Pf1N1B4_1338 0.24 -0.4
1,533,658 + Pf1N1B4_1338 0.31 +0.5
1,533,658 + Pf1N1B4_1338 0.31 -1.0
1,533,659 - Pf1N1B4_1338 0.32 -1.1
1,533,659 - Pf1N1B4_1338 0.32 +1.8
1,533,659 - Pf1N1B4_1338 0.32 +0.6
1,533,659 - Pf1N1B4_1338 0.32 -1.2
1,533,876 + Pf1N1B4_1338 0.47 +2.8
1,533,876 + Pf1N1B4_1338 0.47 -0.6
1,533,876 + Pf1N1B4_1338 0.47 +0.8

Or see this region's nucleotide sequence