Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08645

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,619,725	+				-3.3
1,619,728	-				+0.4
1,619,740	-				+0.2
1,619,851	-				+0.1
1,619,938	-		MMP_RS08640	0.20	+0.3
1,619,960	-		MMP_RS08640	0.23	+0.2
1,619,960	-		MMP_RS08640	0.23	-0.3
1,619,963	-		MMP_RS08640	0.23	-0.2
1,619,974	+		MMP_RS08640	0.24	+0.2
1,620,010	-		MMP_RS08640	0.29	+0.2
1,620,045	-		MMP_RS08640	0.33	-0.0
1,620,236	+		MMP_RS08640	0.56	+0.2
1,620,300	-		MMP_RS08640	0.64	-0.0
1,620,300	-		MMP_RS08640	0.64	+0.1
1,620,301	+		MMP_RS08640	0.64	+0.1
1,620,301	+		MMP_RS08640	0.64	-0.1
1,620,350	+		MMP_RS08640	0.70	-0.0
1,620,352	+		MMP_RS08640	0.70	-0.1
1,620,581	-				+0.0
1,620,591	-				+0.5
1,620,592	+				+0.5
1,620,656	-		MMP_RS08645	0.13	-1.1
1,620,656	-		MMP_RS08645	0.13	-0.6
1,620,671	-		MMP_RS08645	0.16	+1.4
1,620,672	+		MMP_RS08645	0.17	-1.4
1,620,672	+		MMP_RS08645	0.17	-0.2
1,620,672	+		MMP_RS08645	0.17	-1.8
1,620,716	-		MMP_RS08645	0.27	-2.0
1,620,716	-		MMP_RS08645	0.27	-1.8
1,620,723	-		MMP_RS08645	0.28	-0.8
1,620,738	+		MMP_RS08645	0.32	-0.9
1,620,773	-		MMP_RS08645	0.40	-0.8
1,620,794	+		MMP_RS08645	0.45	-1.3
1,620,978	-		MMP_RS08645	0.87	-1.3
1,621,036	-				-0.8
1,621,041	+				-1.2
1,621,054	-				-1.8
1,621,065	+				-1.5
1,621,068	-				-1.0
1,621,069	+				-1.0
1,621,071	-				-0.8
1,621,072	+				-1.2
1,621,072	+				-0.9
1,621,072	+				-0.6
1,621,074	-				-1.2
1,621,074	-				-0.8
1,621,075	+				-0.9
1,621,075	+				-1.3
1,621,075	+				-1.1
1,621,075	+				-1.6
1,621,078	-				-1.3
1,621,078	-				-1.0
1,621,079	+				-1.0
1,621,079	+				-0.5
1,621,081	+				-0.1
1,621,096	+				-0.3
1,621,099	+				-0.6
1,621,103	+				-0.6
1,621,103	+				+0.4
1,621,198	+				-2.1
1,621,201	+				+2.2
1,621,225	-				-1.8
1,621,761	+		MMP_RS08650	0.34	+0.8
1,621,827	-		MMP_RS08650	0.38	-0.4
1,621,828	+		MMP_RS08650	0.38	-1.6
1,622,035	+		MMP_RS08650	0.49	+0.1