Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04720

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
900,913	-				-3.6
900,914	+				-1.7
900,914	+				-2.7
900,914	+				-1.2
900,916	+				-2.0
900,939	-				-1.3
900,940	+				-0.3
901,094	-		MMP_RS04710	0.41	-2.2
901,169	-		MMP_RS04710	0.60	+0.6
901,272	+		MMP_RS04710	0.86	-0.6
901,286	-				-1.2
901,304	-				-0.8
901,307	-				+1.2
901,308	+				+0.8
901,308	+				-0.3
901,308	+				-1.8
901,308	+				-0.8
901,341	-				-0.2
901,360	-				-1.5
901,362	-				-0.7
901,362	-				-3.9
901,362	-				-2.6
901,363	+				+0.6
901,363	+				-0.5
901,363	+				+0.1
901,365	+				+0.6
901,365	+				-1.2
901,365	+				-1.0
901,383	-				-1.1
901,393	-				-0.7
901,402	+				-0.0
901,403	-				-1.0
901,403	-				-1.1
901,403	-				-0.8
901,404	+				+0.4
901,404	+				-0.1
901,404	+				-0.4
901,407	-				-0.2
901,407	-				+0.0
901,408	+				-0.0
901,423	+				-0.3
901,453	-				+0.1
901,470	-				-0.8
901,470	-				-0.1
901,474	-				-0.3
901,474	-				-0.6
901,475	+				-0.2
901,476	-				-1.0
901,476	-				-0.2
901,477	+				-1.3
901,477	+				-0.1
901,478	-				+0.4
901,478	-				-0.9
901,479	+				+0.5
901,479	+				-0.3
901,481	-				-0.1
901,511	+				-0.2
901,582	-		MMP_RS04715	0.19	+1.3
901,583	+		MMP_RS04715	0.19	+0.1
901,583	+		MMP_RS04715	0.19	-0.8
901,598	+		MMP_RS04715	0.23	-0.2
901,620	-		MMP_RS04715	0.29	+0.0
901,626	-		MMP_RS04715	0.30	-0.2
901,627	+		MMP_RS04715	0.30	+0.0
901,636	-		MMP_RS04715	0.33	+0.2
901,648	-		MMP_RS04715	0.36	+0.7
901,649	+		MMP_RS04715	0.36	+0.0
901,650	-		MMP_RS04715	0.36	+0.4
901,702	+		MMP_RS04715	0.50	-0.2
901,710	-		MMP_RS04715	0.52	-0.1
901,710	-		MMP_RS04715	0.52	+0.1
901,729	-		MMP_RS04715	0.57	+0.6
901,729	-		MMP_RS04715	0.57	+0.4
901,740	-		MMP_RS04715	0.60	+0.9
901,750	+		MMP_RS04715	0.63	+0.1
901,931	+				+0.1
902,011	+		MMP_RS04720	0.22	-0.1
902,012	-		MMP_RS04720	0.22	-1.5
902,016	-		MMP_RS04720	0.23	+0.3
902,017	+		MMP_RS04720	0.23	+0.4
902,017	+		MMP_RS04720	0.23	-2.2
902,337	+		MMP_RS04720	0.89	-3.2
902,341	-				+0.2
902,366	-				+0.3
902,391	-				+0.5
902,426	+				-0.4
902,482	+		MMP_RS04725	0.13	+0.5
902,482	+		MMP_RS04725	0.13	-0.0
902,482	+		MMP_RS04725	0.13	+0.1
902,552	-		MMP_RS04725	0.29	-0.3
902,557	+		MMP_RS04725	0.30	-0.0
902,575	-		MMP_RS04725	0.34	+0.0
902,575	-		MMP_RS04725	0.34	+0.3
902,575	-		MMP_RS04725	0.34	-0.1
902,643	-		MMP_RS04725	0.50	+0.0
902,669	-		MMP_RS04725	0.56	-0.1
902,691	-		MMP_RS04725	0.62	+0.2
902,692	+		MMP_RS04725	0.62	-0.2
902,696	-		MMP_RS04725	0.63	-0.2
902,696	-		MMP_RS04725	0.63	+0.4
902,696	-		MMP_RS04725	0.63	+0.2
902,742	+		MMP_RS04725	0.73	+0.0
902,758	+		MMP_RS04725	0.77	-0.6
902,758	+		MMP_RS04725	0.77	-0.3
902,817	-				+0.5
902,873	-				+0.3
902,873	-				-0.3
902,897	-				+0.4
902,897	-				+0.8
902,897	-				+0.2
902,898	+				+0.2
902,898	+				-1.0
902,900	-				-0.0
902,902	-				-0.1
902,903	+				+0.3
902,903	+				+0.0
902,943	-				+0.4
903,018	+		MMP_RS04730	0.20	-0.0
903,088	-		MMP_RS04730	0.32	-0.4
903,094	+		MMP_RS04730	0.34	+0.2
903,160	+		MMP_RS04730	0.45	+0.1
903,171	-		MMP_RS04730	0.47	-0.1
903,171	-		MMP_RS04730	0.47	+0.1
903,228	+		MMP_RS04730	0.57	-0.1
903,243	-		MMP_RS04730	0.59	-0.1
903,244	+		MMP_RS04730	0.59	-0.7
903,247	-		MMP_RS04730	0.60	+0.4
903,248	+		MMP_RS04730	0.60	-0.0
903,248	+		MMP_RS04730	0.60	+0.2
903,248	+		MMP_RS04730	0.60	-0.1
903,248	+		MMP_RS04730	0.60	+0.4
903,250	+		MMP_RS04730	0.60	+0.5
903,295	-		MMP_RS04730	0.68	+0.2
903,301	+		MMP_RS04730	0.69	+0.2