Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03240 and MMP_RS03245 are separated by 46 nucleotides MMP_RS03245 and MMP_RS03250 are separated by 105 nucleotides MMP_RS03250 and MMP_RS03255 are separated by 10 nucleotides MMP_RS03255 and MMP_RS03260 are separated by 22 nucleotides
MMP_RS03240: MMP_RS03240 - tRNA(Ile)(2)-agmatinylcytidine synthase, at 611,386 to 612,660
_RS03240
MMP_RS03245: MMP_RS03245 - DNA repair and recombination protein RadB, at 612,707 to 613,357
_RS03245
MMP_RS03250: MMP_RS03250 - MJ1244 family protein, at 613,463 to 613,792
_RS03250
MMP_RS03255: MMP_RS03255 - DUF134 domain-containing protein, at 613,803 to 614,198
_RS03255
MMP_RS03260: MMP_RS03260 - methyl coenzyme M reductase system component A2, at 614,221 to 615,816
_RS03260
Position (kb) 613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 612.681 kb on + strand at 612.706 kb on - strand at 612.734 kb on + strand at 612.790 kb on - strand, within MMP_RS03245 at 613.003 kb on - strand, within MMP_RS03245 at 613.066 kb on - strand, within MMP_RS03245 at 613.250 kb on + strand, within MMP_RS03245 at 613.253 kb on + strand, within MMP_RS03245 at 613.376 kb on - strand at 613.405 kb on - strand at 613.409 kb on - strand at 613.410 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.702 kb on + strand, within MMP_RS03250 at 613.740 kb on + strand, within MMP_RS03250 at 613.741 kb on - strand, within MMP_RS03250 at 613.742 kb on + strand, within MMP_RS03250 at 614.274 kb on + strand at 614.286 kb on + strand at 614.533 kb on + strand at 614.537 kb on + strand at 614.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 612,681 + -0.2 612,706 - +0.7 612,734 + -0.1 612,790 - MMP_RS03245 0.13 +0.1 613,003 - MMP_RS03245 0.45 +0.3 613,066 - MMP_RS03245 0.55 +0.6 613,250 + MMP_RS03245 0.83 -0.2 613,253 + MMP_RS03245 0.84 +0.2 613,376 - +0.2 613,405 - -0.0 613,409 - -0.3 613,410 + -0.1 613,428 + -0.5 613,428 + -0.4 613,702 + MMP_RS03250 0.72 -0.6 613,740 + MMP_RS03250 0.84 -0.2 613,741 - MMP_RS03250 0.84 -1.2 613,742 + MMP_RS03250 0.85 -0.0 614,274 + -0.9 614,286 + -0.1 614,533 + +1.0 614,537 + -0.8 614,537 + -2.8
Or see this region's nucleotide sequence