Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03215 and MMP_RS03220 are separated by 1 nucleotides MMP_RS03220 and MMP_RS08955 are separated by 8 nucleotides MMP_RS08955 and MMP_RS03225 are separated by 80 nucleotides MMP_RS03225 and MMP_RS03230 are separated by 95 nucleotides MMP_RS03230 and MMP_RS03235 are separated by 213 nucleotides
MMP_RS03215: MMP_RS03215 - MBL fold metallo-hydrolase, at 606,974 to 607,516
_RS03215
MMP_RS03220: MMP_RS03220 - RNA 2' 3'-cyclic phosphodiesterase, at 607,518 to 608,042
_RS03220
MMP_RS08955: MMP_RS08955 - hypothetical protein, at 608,051 to 608,197
_RS08955
MMP_RS03225: MMP_RS03225 - acetolactate decarboxylase, at 608,278 to 609,078
_RS03225
MMP_RS03230: MMP_RS03230 - flavodoxin family protein, at 609,174 to 609,749
_RS03230
MMP_RS03235: MMP_RS03235 - tRNA pseudouridine(13) synthase TruD, at 609,963 to 611,255
_RS03235
Position (kb) 608
609
610 Strain fitness (log2 ratio) -1
0
1 at 607.330 kb on + strand, within MMP_RS03215 at 607.343 kb on - strand, within MMP_RS03215 at 607.405 kb on - strand, within MMP_RS03215 at 607.414 kb on + strand, within MMP_RS03215 at 607.414 kb on + strand, within MMP_RS03215 at 607.453 kb on + strand, within MMP_RS03215 at 607.474 kb on + strand at 607.474 kb on + strand at 607.520 kb on + strand at 607.559 kb on - strand at 607.560 kb on + strand at 607.560 kb on + strand at 607.569 kb on + strand at 607.927 kb on + strand, within MMP_RS03220 at 607.927 kb on + strand, within MMP_RS03220 at 608.230 kb on - strand at 608.245 kb on + strand at 608.262 kb on + strand at 608.331 kb on - strand at 608.462 kb on - strand, within MMP_RS03225 at 608.483 kb on - strand, within MMP_RS03225 at 608.536 kb on - strand, within MMP_RS03225 at 608.536 kb on - strand, within MMP_RS03225 at 608.808 kb on + strand, within MMP_RS03225 at 609.119 kb on + strand at 609.138 kb on - strand at 609.181 kb on - strand at 609.182 kb on + strand at 609.230 kb on + strand at 609.237 kb on + strand, within MMP_RS03230 at 609.283 kb on - strand, within MMP_RS03230 at 609.283 kb on - strand, within MMP_RS03230 at 609.284 kb on + strand, within MMP_RS03230 at 609.315 kb on + strand, within MMP_RS03230 at 609.324 kb on - strand, within MMP_RS03230 at 609.541 kb on - strand, within MMP_RS03230 at 609.548 kb on - strand, within MMP_RS03230 at 609.828 kb on - strand at 609.932 kb on + strand at 609.932 kb on + strand at 609.951 kb on - strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.954 kb on + strand at 609.955 kb on - strand at 609.955 kb on - strand at 609.956 kb on + strand at 609.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 607,330 + MMP_RS03215 0.66 +0.7 607,343 - MMP_RS03215 0.68 +0.4 607,405 - MMP_RS03215 0.79 +0.5 607,414 + MMP_RS03215 0.81 +0.6 607,414 + MMP_RS03215 0.81 +0.3 607,453 + MMP_RS03215 0.88 +0.6 607,474 + +0.6 607,474 + +0.1 607,520 + +0.1 607,559 - -0.4 607,560 + +0.1 607,560 + -1.1 607,569 + +0.3 607,927 + MMP_RS03220 0.78 +0.1 607,927 + MMP_RS03220 0.78 -0.8 608,230 - +0.3 608,245 + -0.0 608,262 + +0.2 608,331 - +0.4 608,462 - MMP_RS03225 0.23 -0.2 608,483 - MMP_RS03225 0.26 +0.1 608,536 - MMP_RS03225 0.32 +0.2 608,536 - MMP_RS03225 0.32 -0.1 608,808 + MMP_RS03225 0.66 -0.1 609,119 + -0.1 609,138 - -0.1 609,181 - -0.4 609,182 + -0.1 609,230 + +0.1 609,237 + MMP_RS03230 0.11 -0.1 609,283 - MMP_RS03230 0.19 -0.0 609,283 - MMP_RS03230 0.19 -0.5 609,284 + MMP_RS03230 0.19 -0.1 609,315 + MMP_RS03230 0.24 +0.1 609,324 - MMP_RS03230 0.26 -0.1 609,541 - MMP_RS03230 0.64 +0.5 609,548 - MMP_RS03230 0.65 +0.0 609,828 - +0.3 609,932 + +0.0 609,932 + +0.1 609,951 - -0.2 609,952 + -0.2 609,952 + -0.1 609,952 + -0.0 609,954 + +0.0 609,955 - +0.5 609,955 - -0.2 609,956 + +0.2 609,956 + -0.0
Or see this region's nucleotide sequence