Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02330 and MMP_RS02335 are separated by 155 nucleotides MMP_RS02335 and MMP_RS02340 are separated by 47 nucleotides MMP_RS02340 and MMP_RS02345 are separated by 31 nucleotides MMP_RS02345 and MMP_RS02350 are separated by 6 nucleotides MMP_RS02350 and MMP_RS02355 are separated by 1 nucleotides
MMP_RS02330: MMP_RS02330 - dihydroorotate dehydrogenase, at 438,564 to 439,478
_RS02330
MMP_RS02335: MMP_RS02335 - DNA-directed RNA polymerase, at 439,634 to 440,197
_RS02335
MMP_RS02340: MMP_RS02340 - DNA-directed RNA polymerase subunit E'', at 440,245 to 440,421
_RS02340
MMP_RS02345: MMP_RS02345 - GTP-dependent dephospho-CoA kinase family protein, at 440,453 to 440,929
_RS02345
MMP_RS02350: MMP_RS02350 - 30S ribosomal protein S24e, at 440,936 to 441,244
_RS02350
MMP_RS02355: MMP_RS02355 - 30S ribosomal protein S27ae, at 441,246 to 441,449
_RS02355
Position (kb) 440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 439.271 kb on + strand at 439.508 kb on + strand at 439.509 kb on - strand at 439.530 kb on + strand at 439.534 kb on + strand at 439.548 kb on - strand at 439.549 kb on + strand at 439.549 kb on + strand at 439.550 kb on - strand at 439.550 kb on - strand at 439.550 kb on - strand at 439.550 kb on - strand at 439.551 kb on + strand at 439.551 kb on + strand at 439.551 kb on + strand at 439.551 kb on + strand at 439.552 kb on - strand at 439.582 kb on + strand at 439.638 kb on + strand at 439.858 kb on - strand at 439.862 kb on - strand at 439.862 kb on - strand at 439.863 kb on + strand at 440.058 kb on - strand at 440.059 kb on + strand at 440.066 kb on + strand at 440.080 kb on + strand at 440.181 kb on - strand at 440.210 kb on - strand at 440.216 kb on - strand at 440.337 kb on + strand, within MMP_RS02340 at 440.390 kb on - strand, within MMP_RS02340 at 440.391 kb on + strand, within MMP_RS02340 at 440.401 kb on - strand, within MMP_RS02340 at 440.415 kb on - strand at 440.420 kb on + strand at 440.439 kb on - strand at 440.441 kb on - strand at 440.441 kb on - strand at 440.457 kb on + strand at 440.460 kb on - strand at 440.475 kb on - strand at 440.530 kb on + strand, within MMP_RS02345 at 440.587 kb on - strand, within MMP_RS02345 at 440.587 kb on - strand, within MMP_RS02345 at 440.587 kb on - strand, within MMP_RS02345 at 440.601 kb on - strand, within MMP_RS02345 at 440.740 kb on + strand, within MMP_RS02345 at 440.808 kb on + strand, within MMP_RS02345 at 440.951 kb on + strand at 440.966 kb on + strand at 441.254 kb on - strand at 441.292 kb on + strand, within MMP_RS02355 at 441.316 kb on - strand, within MMP_RS02355 at 441.359 kb on + strand, within MMP_RS02355
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 439,271 + -2.0 439,508 + -0.0 439,509 - +0.2 439,530 + +0.1 439,534 + +0.3 439,548 - -1.0 439,549 + +0.5 439,549 + +0.4 439,550 - -1.2 439,550 - -0.4 439,550 - -3.1 439,550 - -0.0 439,551 + +0.3 439,551 + -0.3 439,551 + -0.1 439,551 + -0.1 439,552 - -3.1 439,582 + -0.1 439,638 + -1.6 439,858 - -2.3 439,862 - -1.9 439,862 - -1.3 439,863 + -1.8 440,058 - -1.4 440,059 + -3.1 440,066 + -1.3 440,080 + -1.0 440,181 - +0.8 440,210 - -0.9 440,216 - -1.0 440,337 + MMP_RS02340 0.52 -0.3 440,390 - MMP_RS02340 0.82 -1.1 440,391 + MMP_RS02340 0.82 +0.7 440,401 - MMP_RS02340 0.88 -1.8 440,415 - -0.6 440,420 + -0.6 440,439 - -0.8 440,441 - -0.4 440,441 - -0.3 440,457 + -1.3 440,460 - -0.6 440,475 - -0.8 440,530 + MMP_RS02345 0.16 -2.8 440,587 - MMP_RS02345 0.28 -0.5 440,587 - MMP_RS02345 0.28 -0.1 440,587 - MMP_RS02345 0.28 -1.3 440,601 - MMP_RS02345 0.31 +0.2 440,740 + MMP_RS02345 0.60 -1.6 440,808 + MMP_RS02345 0.74 -1.6 440,951 + -2.0 440,966 + -2.0 441,254 - -1.8 441,292 + MMP_RS02355 0.23 -1.8 441,316 - MMP_RS02355 0.34 -1.3 441,359 + MMP_RS02355 0.55 -1.4
Or see this region's nucleotide sequence