Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02140 and MMP_RS02145 are separated by 69 nucleotides MMP_RS02145 and MMP_RS02150 are separated by 301 nucleotides
MMP_RS02140: MMP_RS02140 - methionine synthase, at 399,758 to 400,696
_RS02140
MMP_RS02145: MMP_RS02145 - winged helix-turn-helix transcriptional regulator, at 400,766 to 402,076
_RS02145
MMP_RS02150: MMP_RS02150 - hypothetical protein, at 402,378 to 403,463
_RS02150
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 399.789 kb on - strand at 399.850 kb on - strand at 399.948 kb on - strand at 400.297 kb on - strand at 400.390 kb on - strand at 400.707 kb on + strand at 400.735 kb on - strand at 400.739 kb on - strand at 400.753 kb on + strand at 400.778 kb on + strand at 400.898 kb on - strand, within MMP_RS02145 at 400.906 kb on - strand, within MMP_RS02145 at 400.907 kb on + strand, within MMP_RS02145 at 400.912 kb on - strand, within MMP_RS02145 at 400.913 kb on + strand, within MMP_RS02145 at 401.009 kb on + strand, within MMP_RS02145 at 401.106 kb on - strand, within MMP_RS02145 at 401.107 kb on + strand, within MMP_RS02145 at 401.108 kb on - strand, within MMP_RS02145 at 401.109 kb on + strand, within MMP_RS02145 at 401.109 kb on + strand, within MMP_RS02145 at 401.109 kb on + strand, within MMP_RS02145 at 401.111 kb on + strand, within MMP_RS02145 at 401.113 kb on - strand, within MMP_RS02145 at 401.115 kb on - strand, within MMP_RS02145 at 401.116 kb on + strand, within MMP_RS02145 at 401.176 kb on + strand, within MMP_RS02145 at 401.213 kb on + strand, within MMP_RS02145 at 401.221 kb on - strand, within MMP_RS02145 at 401.221 kb on - strand, within MMP_RS02145 at 401.254 kb on + strand, within MMP_RS02145 at 401.300 kb on + strand, within MMP_RS02145 at 401.310 kb on + strand, within MMP_RS02145 at 401.326 kb on + strand, within MMP_RS02145 at 401.434 kb on - strand, within MMP_RS02145 at 401.527 kb on - strand, within MMP_RS02145 at 401.568 kb on - strand, within MMP_RS02145 at 401.584 kb on + strand, within MMP_RS02145 at 401.629 kb on + strand, within MMP_RS02145 at 401.672 kb on + strand, within MMP_RS02145 at 401.675 kb on + strand, within MMP_RS02145 at 401.680 kb on + strand, within MMP_RS02145 at 401.692 kb on + strand, within MMP_RS02145 at 401.869 kb on + strand, within MMP_RS02145 at 402.060 kb on - strand at 402.060 kb on - strand at 402.092 kb on + strand at 402.112 kb on + strand at 402.127 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.135 kb on + strand at 402.148 kb on - strand at 402.148 kb on - strand at 402.194 kb on + strand at 402.198 kb on - strand at 402.230 kb on + strand at 402.246 kb on + strand at 402.250 kb on - strand at 402.250 kb on - strand at 402.251 kb on + strand at 402.251 kb on + strand at 402.389 kb on - strand at 402.395 kb on - strand at 402.861 kb on - strand at 402.862 kb on + strand at 402.864 kb on + strand at 402.876 kb on - strand at 402.908 kb on - strand at 402.935 kb on + strand at 402.935 kb on + strand at 402.971 kb on + strand at 402.971 kb on + strand at 403.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 399,789 - -0.2 399,850 - -0.3 399,948 - -2.3 400,297 - -0.7 400,390 - -1.6 400,707 + -1.3 400,735 - -0.5 400,739 - -0.0 400,753 + -0.5 400,778 + +1.3 400,898 - MMP_RS02145 0.10 -0.3 400,906 - MMP_RS02145 0.11 -3.4 400,907 + MMP_RS02145 0.11 -1.0 400,912 - MMP_RS02145 0.11 +0.6 400,913 + MMP_RS02145 0.11 -1.9 401,009 + MMP_RS02145 0.19 -0.9 401,106 - MMP_RS02145 0.26 -2.7 401,107 + MMP_RS02145 0.26 -0.6 401,108 - MMP_RS02145 0.26 +0.5 401,109 + MMP_RS02145 0.26 -0.1 401,109 + MMP_RS02145 0.26 -0.8 401,109 + MMP_RS02145 0.26 +0.3 401,111 + MMP_RS02145 0.26 -1.2 401,113 - MMP_RS02145 0.26 -2.5 401,115 - MMP_RS02145 0.27 -1.3 401,116 + MMP_RS02145 0.27 -0.8 401,176 + MMP_RS02145 0.31 -0.9 401,213 + MMP_RS02145 0.34 +0.5 401,221 - MMP_RS02145 0.35 -0.3 401,221 - MMP_RS02145 0.35 -0.9 401,254 + MMP_RS02145 0.37 -0.8 401,300 + MMP_RS02145 0.41 -0.4 401,310 + MMP_RS02145 0.41 +0.2 401,326 + MMP_RS02145 0.43 +0.6 401,434 - MMP_RS02145 0.51 -1.0 401,527 - MMP_RS02145 0.58 -1.7 401,568 - MMP_RS02145 0.61 -1.0 401,584 + MMP_RS02145 0.62 -0.0 401,629 + MMP_RS02145 0.66 -2.0 401,672 + MMP_RS02145 0.69 -1.8 401,675 + MMP_RS02145 0.69 +1.0 401,680 + MMP_RS02145 0.70 -1.7 401,692 + MMP_RS02145 0.71 -0.9 401,869 + MMP_RS02145 0.84 -3.0 402,060 - +0.5 402,060 - -0.0 402,092 + -0.1 402,112 + -0.2 402,127 - +0.3 402,132 - -0.1 402,132 - -0.1 402,132 - -0.2 402,132 - +0.6 402,132 - +0.1 402,133 + +0.1 402,133 + +0.2 402,133 + -0.1 402,133 + -0.0 402,133 + +0.5 402,133 + +0.4 402,135 + +0.2 402,148 - +0.3 402,148 - +0.2 402,194 + +0.5 402,198 - +1.4 402,230 + -0.5 402,246 + -0.8 402,250 - -0.4 402,250 - +0.7 402,251 + +0.2 402,251 + -1.2 402,389 - +0.2 402,395 - -0.1 402,861 - -1.3 402,862 + -1.1 402,864 + +0.7 402,876 - -0.9 402,908 - -1.1 402,935 + +0.2 402,935 + -0.7 402,971 + +0.5 402,971 + +0.1 403,071 - -0.2
Or see this region's nucleotide sequence