Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01590 and MMP_RS01595 are separated by 57 nucleotides MMP_RS01595 and MMP_RS01600 are separated by 226 nucleotides MMP_RS01600 and MMP_RS01605 are separated by 975 nucleotides
MMP_RS01590: MMP_RS01590 - hypothetical protein, at 296,196 to 297,284
_RS01590
MMP_RS01595: MMP_RS01595 - translation initiation factor IF-2 subunit beta, at 297,342 to 297,758
_RS01595
MMP_RS01600: MMP_RS01600 - 50S ribosomal protein L15e, at 297,985 to 298,569
_RS01600
MMP_RS01605: MMP_RS01605 - hypothetical protein, at 299,545 to 299,793
_RS01605
Position (kb) 297
298
299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 297.045 kb on + strand at 297.315 kb on - strand at 297.319 kb on - strand at 297.843 kb on + strand at 297.874 kb on - strand at 297.891 kb on + strand at 298.001 kb on + strand at 298.141 kb on - strand, within MMP_RS01600 at 298.183 kb on + strand, within MMP_RS01600 at 298.380 kb on + strand, within MMP_RS01600 at 298.504 kb on - strand, within MMP_RS01600 at 298.616 kb on - strand at 298.656 kb on - strand at 298.660 kb on - strand at 298.661 kb on + strand at 298.668 kb on - strand at 298.679 kb on - strand at 298.855 kb on - strand at 298.921 kb on - strand at 298.928 kb on - strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.982 kb on + strand at 299.024 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.185 kb on - strand at 299.186 kb on + strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.189 kb on + strand at 299.190 kb on - strand at 299.194 kb on - strand at 299.195 kb on + strand at 299.199 kb on - strand at 299.199 kb on - strand at 299.201 kb on - strand at 299.206 kb on + strand at 299.209 kb on - strand at 299.252 kb on - strand at 299.287 kb on - strand at 299.290 kb on - strand at 299.294 kb on - strand at 299.303 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.399 kb on + strand at 299.423 kb on - strand at 299.423 kb on - strand at 299.424 kb on + strand at 299.456 kb on + strand at 299.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 297,045 + -3.3 297,315 - +0.3 297,319 - +0.1 297,843 + -0.8 297,874 - -3.2 297,891 + -1.6 298,001 + -2.1 298,141 - MMP_RS01600 0.27 -1.0 298,183 + MMP_RS01600 0.34 -3.8 298,380 + MMP_RS01600 0.68 -0.4 298,504 - MMP_RS01600 0.89 +0.0 298,616 - -0.2 298,656 - -0.7 298,660 - -0.2 298,661 + -0.6 298,668 - -0.1 298,679 - +0.5 298,855 - +0.1 298,921 - -0.1 298,928 - +0.0 298,938 + -0.4 298,938 + -0.4 298,938 + +0.2 298,938 + +0.1 298,982 + +0.0 299,024 - -0.3 299,061 - -0.2 299,061 - -0.0 299,061 - +0.2 299,185 - -0.4 299,186 + -0.3 299,188 - -0.6 299,188 - -0.1 299,188 - +0.0 299,188 - +0.3 299,189 + +0.2 299,190 - -0.4 299,194 - -0.1 299,195 + +0.6 299,199 - +0.2 299,199 - +0.2 299,201 - +0.7 299,206 + -0.1 299,209 - -0.3 299,252 - +0.5 299,287 - +0.0 299,290 - -0.0 299,294 - +0.4 299,303 + +0.2 299,309 + +0.2 299,309 + +0.3 299,399 + +0.4 299,423 - +0.4 299,423 - -0.8 299,424 + -0.5 299,456 + +0.1 299,463 - +0.2
Or see this region's nucleotide sequence