Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01330 and MMP_RS01335 are separated by 37 nucleotides MMP_RS01335 and MMP_RS01340 are separated by 57 nucleotides MMP_RS01340 and MMP_RS01345 are separated by 7 nucleotides MMP_RS01345 and MMP_RS01350 overlap by 1 nucleotides
MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767
_RS01330
MMP_RS01335: MMP_RS01335 - prefoldin subunit beta, at 249,805 to 250,146
_RS01335
MMP_RS01340: MMP_RS01340 - KEOPS complex Pcc1-like subunit, at 250,204 to 250,455
_RS01340
MMP_RS01345: MMP_RS01345 - rRNA maturation protein, at 250,463 to 250,957
_RS01345
MMP_RS01350: MMP_RS01350 - DNA-directed RNA polymerase subunit P, at 250,957 to 251,097
_RS01350
Position (kb) 249
250
251 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 248.973 kb on - strand, within MMP_RS01330 at 248.987 kb on - strand, within MMP_RS01330 at 249.032 kb on - strand, within MMP_RS01330 at 249.033 kb on + strand, within MMP_RS01330 at 249.036 kb on - strand, within MMP_RS01330 at 249.036 kb on - strand, within MMP_RS01330 at 249.090 kb on + strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.094 kb on - strand, within MMP_RS01330 at 249.095 kb on + strand, within MMP_RS01330 at 249.095 kb on + strand, within MMP_RS01330 at 249.098 kb on - strand, within MMP_RS01330 at 249.126 kb on + strand, within MMP_RS01330 at 249.181 kb on - strand, within MMP_RS01330 at 249.201 kb on - strand, within MMP_RS01330 at 249.201 kb on - strand, within MMP_RS01330 at 249.202 kb on + strand, within MMP_RS01330 at 249.202 kb on + strand, within MMP_RS01330 at 249.203 kb on - strand, within MMP_RS01330 at 249.203 kb on - strand, within MMP_RS01330 at 249.225 kb on - strand, within MMP_RS01330 at 249.230 kb on - strand, within MMP_RS01330 at 249.231 kb on + strand, within MMP_RS01330 at 249.267 kb on + strand, within MMP_RS01330 at 249.267 kb on + strand, within MMP_RS01330 at 249.271 kb on - strand, within MMP_RS01330 at 249.437 kb on - strand, within MMP_RS01330 at 249.449 kb on - strand, within MMP_RS01330 at 249.450 kb on + strand, within MMP_RS01330 at 249.534 kb on - strand, within MMP_RS01330 at 249.534 kb on - strand, within MMP_RS01330 at 249.534 kb on - strand, within MMP_RS01330 at 249.555 kb on - strand, within MMP_RS01330 at 249.588 kb on - strand, within MMP_RS01330 at 249.604 kb on + strand, within MMP_RS01330 at 249.714 kb on - strand at 249.790 kb on - strand at 249.806 kb on - strand at 249.854 kb on - strand, within MMP_RS01335 at 249.891 kb on - strand, within MMP_RS01335 at 250.181 kb on + strand at 250.192 kb on + strand at 250.202 kb on - strand at 250.206 kb on + strand at 250.226 kb on - strand at 250.226 kb on - strand at 250.227 kb on + strand at 250.260 kb on + strand at 250.265 kb on - strand at 250.458 kb on - strand at 250.603 kb on + strand at 250.606 kb on - strand at 250.811 kb on - strand at 250.811 kb on - strand at 250.812 kb on + strand at 250.818 kb on + strand at 250.977 kb on - strand at 250.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 248,973 - MMP_RS01330 0.22 +0.0 248,987 - MMP_RS01330 0.23 -0.1 249,032 - MMP_RS01330 0.28 -0.3 249,033 + MMP_RS01330 0.28 -0.5 249,036 - MMP_RS01330 0.28 -0.3 249,036 - MMP_RS01330 0.28 -0.1 249,090 + MMP_RS01330 0.33 -0.4 249,094 - MMP_RS01330 0.34 -0.1 249,094 - MMP_RS01330 0.34 -0.5 249,094 - MMP_RS01330 0.34 +0.4 249,095 + MMP_RS01330 0.34 -1.4 249,095 + MMP_RS01330 0.34 -1.6 249,098 - MMP_RS01330 0.34 -0.1 249,126 + MMP_RS01330 0.37 -0.2 249,181 - MMP_RS01330 0.42 +0.3 249,201 - MMP_RS01330 0.44 +0.1 249,201 - MMP_RS01330 0.44 -0.5 249,202 + MMP_RS01330 0.44 -0.6 249,202 + MMP_RS01330 0.44 -0.4 249,203 - MMP_RS01330 0.44 -0.9 249,203 - MMP_RS01330 0.44 +0.3 249,225 - MMP_RS01330 0.47 -0.4 249,230 - MMP_RS01330 0.47 -0.3 249,231 + MMP_RS01330 0.47 -0.1 249,267 + MMP_RS01330 0.51 -0.6 249,267 + MMP_RS01330 0.51 -0.5 249,271 - MMP_RS01330 0.51 -0.1 249,437 - MMP_RS01330 0.67 +0.2 249,449 - MMP_RS01330 0.69 +0.5 249,450 + MMP_RS01330 0.69 -0.2 249,534 - MMP_RS01330 0.77 -0.5 249,534 - MMP_RS01330 0.77 -0.0 249,534 - MMP_RS01330 0.77 -0.4 249,555 - MMP_RS01330 0.79 -0.2 249,588 - MMP_RS01330 0.82 -0.1 249,604 + MMP_RS01330 0.84 +0.1 249,714 - -0.0 249,790 - -0.4 249,806 - -0.2 249,854 - MMP_RS01335 0.14 -0.6 249,891 - MMP_RS01335 0.25 -0.7 250,181 + -0.3 250,192 + -0.4 250,202 - -0.2 250,206 + -0.8 250,226 - -1.9 250,226 - -1.0 250,227 + -4.1 250,260 + -1.7 250,265 - -1.1 250,458 - -2.2 250,603 + -1.8 250,606 - -0.3 250,811 - -1.6 250,811 - -1.4 250,812 + +0.0 250,818 + -2.6 250,977 - -2.0 250,993 - -3.2
Or see this region's nucleotide sequence