Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01195

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01190 and MMP_RS01195 are separated by 2 nucleotidesMMP_RS01195 and MMP_RS01200 are separated by 120 nucleotides MMP_RS01190: MMP_RS01190 - cadmium-translocating P-type ATPase, at 222,645 to 224,720 _RS01190 MMP_RS01195: MMP_RS01195 - metalloregulator ArsR/SmtB family transcription factor, at 224,723 to 225,067 _RS01195 MMP_RS01200: MMP_RS01200 - hypothetical protein, at 225,188 to 225,925 _RS01200 Position (kb) 224 225 226Strain fitness (log2 ratio) -1 0 1at 223.776 kb on - strand, within MMP_RS01190at 223.776 kb on - strand, within MMP_RS01190at 223.841 kb on - strand, within MMP_RS01190at 224.265 kb on - strand, within MMP_RS01190at 224.349 kb on + strand, within MMP_RS01190at 224.367 kb on - strand, within MMP_RS01190at 224.370 kb on - strand, within MMP_RS01190at 224.374 kb on - strand, within MMP_RS01190at 224.485 kb on - strand, within MMP_RS01190at 224.529 kb on - strandat 224.599 kb on + strandat 224.725 kb on + strandat 224.966 kb on + strand, within MMP_RS01195at 225.125 kb on + strandat 225.187 kb on - strandat 225.187 kb on - strandat 225.188 kb on + strandat 225.412 kb on + strand, within MMP_RS01200at 225.412 kb on + strand, within MMP_RS01200at 225.572 kb on + strand, within MMP_RS01200at 225.596 kb on + strand, within MMP_RS01200at 225.693 kb on - strand, within MMP_RS01200at 225.946 kb on - strandat 226.015 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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223,776 - MMP_RS01190 0.54 -0.3
223,776 - MMP_RS01190 0.54 -0.6
223,841 - MMP_RS01190 0.58 -0.0
224,265 - MMP_RS01190 0.78 -0.0
224,349 + MMP_RS01190 0.82 -0.4
224,367 - MMP_RS01190 0.83 +0.2
224,370 - MMP_RS01190 0.83 +0.2
224,374 - MMP_RS01190 0.83 -0.4
224,485 - MMP_RS01190 0.89 -0.2
224,529 - -0.3
224,599 + +0.1
224,725 + +0.3
224,966 + MMP_RS01195 0.70 -1.0
225,125 + -0.1
225,187 - +0.3
225,187 - -0.1
225,188 + -0.4
225,412 + MMP_RS01200 0.30 +0.1
225,412 + MMP_RS01200 0.30 +0.2
225,572 + MMP_RS01200 0.52 +0.0
225,596 + MMP_RS01200 0.55 +0.8
225,693 - MMP_RS01200 0.68 -0.5
225,946 - -0.0
226,015 + +0.1

Or see this region's nucleotide sequence