Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00955 and MMP_RS00960 are separated by 3 nucleotides MMP_RS00960 and MMP_RS00965 are separated by 2 nucleotides MMP_RS00965 and MMP_RS00970 are separated by 81 nucleotides
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
MMP_RS00965: MMP_RS00965 - hypothetical protein, at 180,131 to 180,415
_RS00965
MMP_RS00970: MMP_RS00970 - coenzyme F430 synthase, at 180,497 to 181,699
_RS00970
Position (kb) 180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 179.143 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.146 kb on + strand, within MMP_RS00955 at 179.229 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.285 kb on + strand, within MMP_RS00955 at 179.386 kb on - strand at 179.438 kb on + strand at 179.573 kb on - strand, within MMP_RS00960 at 179.740 kb on + strand, within MMP_RS00960 at 179.889 kb on + strand, within MMP_RS00960 at 179.959 kb on - strand, within MMP_RS00960 at 180.064 kb on - strand at 180.382 kb on - strand, within MMP_RS00965 at 180.382 kb on - strand, within MMP_RS00965 at 180.385 kb on - strand, within MMP_RS00965 at 180.407 kb on - strand at 180.407 kb on - strand at 180.408 kb on + strand at 180.420 kb on + strand at 180.447 kb on + strand at 180.632 kb on + strand at 180.924 kb on - strand at 180.933 kb on - strand at 181.086 kb on - strand at 181.086 kb on - strand at 181.149 kb on - strand at 181.151 kb on - strand at 181.152 kb on + strand at 181.291 kb on + strand at 181.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 179,143 - MMP_RS00955 0.72 +0.5 179,143 - MMP_RS00955 0.72 -0.0 179,144 + MMP_RS00955 0.73 +0.4 179,144 + MMP_RS00955 0.73 -0.2 179,144 + MMP_RS00955 0.73 -0.4 179,144 + MMP_RS00955 0.73 -0.1 179,146 + MMP_RS00955 0.73 +0.4 179,229 - MMP_RS00955 0.83 +0.2 179,231 - MMP_RS00955 0.83 -0.1 179,231 - MMP_RS00955 0.83 +0.1 179,232 + MMP_RS00955 0.83 +0.2 179,232 + MMP_RS00955 0.83 -0.2 179,285 + MMP_RS00955 0.89 -0.1 179,386 - -0.2 179,438 + +0.2 179,573 - MMP_RS00960 0.26 -0.1 179,740 + MMP_RS00960 0.48 -0.0 179,889 + MMP_RS00960 0.68 +0.1 179,959 - MMP_RS00960 0.77 +0.0 180,064 - +0.4 180,382 - MMP_RS00965 0.88 -0.6 180,382 - MMP_RS00965 0.88 -0.4 180,385 - MMP_RS00965 0.89 +0.1 180,407 - +0.1 180,407 - +0.1 180,408 + -0.1 180,420 + +0.0 180,447 + +0.1 180,632 + -3.4 180,924 - -0.9 180,933 - -2.2 181,086 - -2.0 181,086 - -1.0 181,149 - -1.5 181,151 - -1.1 181,152 + -1.4 181,291 + -1.3 181,406 + -2.0
Or see this region's nucleotide sequence