Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00755 and MMP_RS00760 are separated by 49 nucleotides MMP_RS00760 and MMP_RS00765 are separated by 72 nucleotides
MMP_RS00755: MMP_RS00755 - tyrosine decarboxylase MfnA, at 137,305 to 138,459
_RS00755
MMP_RS00760: MMP_RS00760 - branched-chain-amino-acid transaminase, at 138,509 to 139,372
_RS00760
MMP_RS00765: MMP_RS00765 - IMP dehydrogenase, at 139,445 to 140,947
_RS00765
Position (kb) 138
139
140 Strain fitness (log2 ratio) -2
-1
0
1 at 137.522 kb on - strand at 137.551 kb on + strand at 137.829 kb on - strand at 137.933 kb on - strand at 137.934 kb on + strand at 137.943 kb on - strand at 138.458 kb on + strand at 138.464 kb on - strand at 138.564 kb on - strand at 138.660 kb on - strand, within MMP_RS00760 at 138.753 kb on - strand, within MMP_RS00760 at 138.753 kb on - strand, within MMP_RS00760 at 138.754 kb on + strand, within MMP_RS00760 at 138.764 kb on - strand, within MMP_RS00760 at 138.765 kb on + strand, within MMP_RS00760 at 138.768 kb on - strand, within MMP_RS00760 at 138.769 kb on + strand, within MMP_RS00760 at 138.769 kb on + strand, within MMP_RS00760 at 138.895 kb on + strand, within MMP_RS00760 at 139.062 kb on - strand, within MMP_RS00760 at 139.072 kb on - strand, within MMP_RS00760 at 139.081 kb on - strand, within MMP_RS00760 at 139.082 kb on + strand, within MMP_RS00760 at 139.371 kb on + strand at 139.433 kb on - strand at 139.434 kb on + strand at 139.446 kb on - strand at 139.625 kb on - strand at 140.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 137,522 - -0.7 137,551 + -1.7 137,829 - -1.4 137,933 - -0.8 137,934 + -0.6 137,943 - -0.4 138,458 + +0.3 138,464 - +0.0 138,564 - +0.5 138,660 - MMP_RS00760 0.17 +0.0 138,753 - MMP_RS00760 0.28 -0.4 138,753 - MMP_RS00760 0.28 +0.3 138,754 + MMP_RS00760 0.28 +0.2 138,764 - MMP_RS00760 0.30 +0.4 138,765 + MMP_RS00760 0.30 +0.1 138,768 - MMP_RS00760 0.30 +0.3 138,769 + MMP_RS00760 0.30 -0.1 138,769 + MMP_RS00760 0.30 -0.4 138,895 + MMP_RS00760 0.45 +0.2 139,062 - MMP_RS00760 0.64 -0.0 139,072 - MMP_RS00760 0.65 -0.4 139,081 - MMP_RS00760 0.66 +0.0 139,082 + MMP_RS00760 0.66 +0.1 139,371 + +0.1 139,433 - -0.0 139,434 + -0.0 139,446 - +0.6 139,625 - -2.0 140,291 + -1.2
Or see this region's nucleotide sequence