Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00685 and MMP_RS00690 are separated by 46 nucleotides MMP_RS00690 and MMP_RS00695 are separated by 12 nucleotides MMP_RS00695 and MMP_RS00700 are separated by 11 nucleotides MMP_RS00700 and MMP_RS00705 are separated by 12 nucleotides MMP_RS00705 and MMP_RS00710 are separated by 3 nucleotides
MMP_RS00685: MMP_RS00685 - 2-phospho-L-lactate guanylyltransferase, at 125,209 to 125,877
_RS00685
MMP_RS00690: MMP_RS00690 - MBL fold metallo-hydrolase, at 125,924 to 126,541
_RS00690
MMP_RS00695: MMP_RS00695 - biotin--[acetyl-CoA-carboxylase] ligase, at 126,554 to 127,249
_RS00695
MMP_RS00700: MMP_RS00700 - OB-fold nucleic acid binding domain-containing protein, at 127,261 to 127,647
_RS00700
MMP_RS00705: MMP_RS00705 - hypothetical protein, at 127,660 to 127,977
_RS00705
MMP_RS00710: MMP_RS00710 - hypothetical protein, at 127,981 to 128,889
_RS00710
Position (kb) 126
127
128 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 125.785 kb on - strand, within MMP_RS00685 at 125.906 kb on - strand at 125.925 kb on - strand at 125.930 kb on + strand at 125.958 kb on + strand at 125.988 kb on + strand, within MMP_RS00690 at 126.008 kb on + strand, within MMP_RS00690 at 126.009 kb on - strand, within MMP_RS00690 at 126.131 kb on - strand, within MMP_RS00690 at 126.170 kb on - strand, within MMP_RS00690 at 126.263 kb on + strand, within MMP_RS00690 at 126.271 kb on - strand, within MMP_RS00690 at 126.280 kb on - strand, within MMP_RS00690 at 126.305 kb on - strand, within MMP_RS00690 at 126.305 kb on - strand, within MMP_RS00690 at 126.305 kb on - strand, within MMP_RS00690 at 126.318 kb on + strand, within MMP_RS00690 at 126.391 kb on - strand, within MMP_RS00690 at 126.391 kb on - strand, within MMP_RS00690 at 126.396 kb on - strand, within MMP_RS00690 at 126.491 kb on - strand at 126.671 kb on - strand, within MMP_RS00695 at 126.821 kb on - strand, within MMP_RS00695 at 127.200 kb on - strand at 127.262 kb on - strand at 127.276 kb on - strand at 127.283 kb on + strand at 127.327 kb on - strand, within MMP_RS00700 at 127.332 kb on + strand, within MMP_RS00700 at 127.356 kb on - strand, within MMP_RS00700 at 127.496 kb on - strand, within MMP_RS00700 at 127.517 kb on - strand, within MMP_RS00700 at 127.563 kb on + strand, within MMP_RS00700 at 127.831 kb on + strand, within MMP_RS00705 at 127.841 kb on + strand, within MMP_RS00705 at 128.064 kb on + strand at 128.205 kb on - strand, within MMP_RS00710
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 125,785 - MMP_RS00685 0.86 -2.9 125,906 - -0.3 125,925 - -0.1 125,930 + -0.3 125,958 + +0.7 125,988 + MMP_RS00690 0.10 -0.2 126,008 + MMP_RS00690 0.14 +0.1 126,009 - MMP_RS00690 0.14 -0.0 126,131 - MMP_RS00690 0.33 -0.3 126,170 - MMP_RS00690 0.40 -0.2 126,263 + MMP_RS00690 0.55 +0.4 126,271 - MMP_RS00690 0.56 -0.0 126,280 - MMP_RS00690 0.58 +0.7 126,305 - MMP_RS00690 0.62 +0.2 126,305 - MMP_RS00690 0.62 +0.3 126,305 - MMP_RS00690 0.62 -0.1 126,318 + MMP_RS00690 0.64 +0.0 126,391 - MMP_RS00690 0.76 -0.2 126,391 - MMP_RS00690 0.76 -0.1 126,396 - MMP_RS00690 0.76 -0.1 126,491 - +0.5 126,671 - MMP_RS00695 0.17 -0.9 126,821 - MMP_RS00695 0.38 -1.7 127,200 - -2.2 127,262 - -0.9 127,276 - +0.0 127,283 + +0.3 127,327 - MMP_RS00700 0.17 +0.0 127,332 + MMP_RS00700 0.18 -0.1 127,356 - MMP_RS00700 0.25 +0.1 127,496 - MMP_RS00700 0.61 -0.4 127,517 - MMP_RS00700 0.66 -0.2 127,563 + MMP_RS00700 0.78 -0.1 127,831 + MMP_RS00705 0.54 +0.1 127,841 + MMP_RS00705 0.57 +0.2 128,064 + -0.5 128,205 - MMP_RS00710 0.25 +0.3
Or see this region's nucleotide sequence