Strain Fitness in Pantoea sp. MT58 around IAI47_13540

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,871,698	-		IAI47_13535	0.30	+1.2
2,871,740	+		IAI47_13535	0.33	-2.6
2,871,741	-		IAI47_13535	0.33	-0.4
2,871,762	+		IAI47_13535	0.35	+0.4
2,871,763	-		IAI47_13535	0.35	-0.1
2,871,763	-		IAI47_13535	0.35	+0.2
2,871,763	-		IAI47_13535	0.35	-1.5
2,871,763	-		IAI47_13535	0.35	+0.4
2,871,823	+		IAI47_13535	0.40	-2.4
2,871,824	-		IAI47_13535	0.40	+0.6
2,871,959	+		IAI47_13535	0.50	+2.2
2,871,959	+		IAI47_13535	0.50	-1.0
2,871,959	+		IAI47_13535	0.50	+1.4
2,871,959	+		IAI47_13535	0.50	+1.2
2,871,960	-		IAI47_13535	0.50	+0.5
2,871,960	-		IAI47_13535	0.50	+1.6
2,871,962	+		IAI47_13535	0.50	+0.5
2,871,962	+		IAI47_13535	0.50	+0.1
2,871,962	+		IAI47_13535	0.50	+1.3
2,871,963	-		IAI47_13535	0.50	+2.0
2,871,963	-		IAI47_13535	0.50	-2.3
2,871,963	-		IAI47_13535	0.50	+3.0
2,871,963	-		IAI47_13535	0.50	+0.6
2,871,963	-		IAI47_13535	0.50	-0.1
2,871,963	-		IAI47_13535	0.50	+1.0
2,871,963	-		IAI47_13535	0.50	+1.0
2,871,988	+		IAI47_13535	0.52	-3.2
2,871,988	+		IAI47_13535	0.52	-3.1
2,871,988	+		IAI47_13535	0.52	+0.0
2,871,989	-		IAI47_13535	0.52	-0.3
2,871,989	-		IAI47_13535	0.52	+1.6
2,872,001	-		IAI47_13535	0.53	-0.2
2,872,034	-		IAI47_13535	0.56	-1.4
2,872,126	-		IAI47_13535	0.63	+2.2
2,872,126	-		IAI47_13535	0.63	+1.0
2,872,126	-		IAI47_13535	0.63	-0.7
2,872,127	+		IAI47_13535	0.63	+0.3
2,872,127	+		IAI47_13535	0.63	-1.0
2,872,127	+		IAI47_13535	0.63	+3.5
2,872,127	+		IAI47_13535	0.63	+0.6
2,872,127	+		IAI47_13535	0.63	+1.3
2,872,127	+		IAI47_13535	0.63	-1.0
2,872,127	+		IAI47_13535	0.63	+2.4
2,872,127	+		IAI47_13535	0.63	+0.1
2,872,127	+		IAI47_13535	0.63	-0.6
2,872,127	+		IAI47_13535	0.63	-1.2
2,872,127	+		IAI47_13535	0.63	-0.8
2,872,128	-		IAI47_13535	0.63	+1.5
2,872,128	-		IAI47_13535	0.63	+0.3
2,872,128	-		IAI47_13535	0.63	-1.2
2,872,128	-		IAI47_13535	0.63	+2.2
2,872,128	-		IAI47_13535	0.63	-0.5
2,872,128	-		IAI47_13535	0.63	+0.9
2,872,128	-		IAI47_13535	0.63	+1.8
2,872,128	-		IAI47_13535	0.63	-0.7
2,872,128	-		IAI47_13535	0.63	-1.5
2,872,128	-		IAI47_13535	0.63	-0.1
2,872,128	-		IAI47_13535	0.63	+1.4
2,872,513	+				+2.4
2,872,513	+				-0.8
2,872,514	-				-1.3
2,872,528	+				+0.2
2,872,528	+				+0.7
2,872,528	+				-0.0
2,872,528	+				-2.3
2,872,528	+				+2.6
2,872,529	-				+1.2
2,872,529	-				-2.3
2,872,536	+				+0.2
2,872,537	-				-1.5
2,872,537	-				-0.2
2,872,537	-				-0.1
2,872,572	-				+0.0
2,872,661	+				+0.6
2,872,662	-				+1.3
2,872,699	-				-0.5
2,872,773	+		IAI47_13540	0.18	-1.3
2,872,773	+		IAI47_13540	0.18	-1.7
2,872,773	+		IAI47_13540	0.18	-2.0
2,872,773	+		IAI47_13540	0.18	-0.2
2,872,773	+		IAI47_13540	0.18	+0.0
2,872,773	+		IAI47_13540	0.18	+0.4
2,872,773	+		IAI47_13540	0.18	+1.0
2,872,773	+		IAI47_13540	0.18	+1.5
2,872,774	-		IAI47_13540	0.18	-0.4
2,872,774	-		IAI47_13540	0.18	+0.8
2,872,774	-		IAI47_13540	0.18	-0.1
2,872,774	-		IAI47_13540	0.18	+1.6
2,872,837	+		IAI47_13540	0.31	-1.7
2,872,837	+		IAI47_13540	0.31	+1.1
2,872,837	+		IAI47_13540	0.31	+0.2
2,872,837	+		IAI47_13540	0.31	+2.4
2,872,838	-		IAI47_13540	0.32	-1.0
2,872,993	+		IAI47_13540	0.64	-2.1
2,873,033	-		IAI47_13540	0.73	+0.4
2,873,109	+		IAI47_13540	0.88	-0.6
2,873,109	+		IAI47_13540	0.88	+0.2
2,873,110	-		IAI47_13540	0.89	+3.3
2,873,110	-		IAI47_13540	0.89	+0.0
2,873,156	-				-1.1
2,873,156	-				-3.4
2,873,161	+				+0.8
2,873,161	+				-0.5
2,873,162	-				-1.2
2,873,192	-				-0.6
2,873,220	+				-0.4
2,873,221	-				+0.3
2,873,221	-				+0.3
2,873,225	+				+2.4
2,873,226	-				+1.9
2,873,226	-				+1.1
2,873,407	+				-0.3
2,873,408	-				+0.4
2,873,451	+				+0.6
2,873,451	+				-1.6
2,873,452	-				+0.0
2,873,458	+				-1.4
2,873,475	+				+0.0
2,873,475	+				-2.5
2,873,476	-				-1.8
2,873,495	+				+0.6
2,873,503	+				-1.2
2,873,504	-				+0.6
2,873,504	-				-2.1
2,873,545	+		IAI47_13545	0.14	-1.2
2,873,545	+		IAI47_13545	0.14	-1.0
2,873,546	-		IAI47_13545	0.14	-3.2
2,873,546	-		IAI47_13545	0.14	+0.3
2,873,677	+		IAI47_13545	0.27	-2.6
2,873,708	+		IAI47_13545	0.30	-1.4
2,873,750	+		IAI47_13545	0.34	-0.4
2,873,750	+		IAI47_13545	0.34	+0.7
2,873,751	-		IAI47_13545	0.34	-0.4
2,873,751	-		IAI47_13545	0.34	-0.7
2,873,751	-		IAI47_13545	0.34	-0.7
2,873,789	+		IAI47_13545	0.38	+0.6
2,873,790	-		IAI47_13545	0.38	-2.1
2,873,793	+		IAI47_13545	0.39	-2.1
2,873,794	-		IAI47_13545	0.39	-0.6
2,873,794	-		IAI47_13545	0.39	-0.4
2,873,794	-		IAI47_13545	0.39	-1.6
2,873,794	-		IAI47_13545	0.39	-1.7
2,873,794	-		IAI47_13545	0.39	-2.6
2,873,830	-		IAI47_13545	0.42	+0.0
2,873,837	-		IAI47_13545	0.43	-1.4
2,873,889	+		IAI47_13545	0.48	+0.0
2,873,889	+		IAI47_13545	0.48	-1.2
2,873,889	+		IAI47_13545	0.48	+0.0
2,873,889	+		IAI47_13545	0.48	-0.9
2,873,889	+		IAI47_13545	0.48	-0.9
2,873,890	-		IAI47_13545	0.48	+0.3
2,873,890	-		IAI47_13545	0.48	-0.9
2,873,890	-		IAI47_13545	0.48	-3.1
2,873,890	-		IAI47_13545	0.48	+1.0
2,873,912	+		IAI47_13545	0.50	-0.4
2,873,913	-		IAI47_13545	0.51	+0.2
2,873,957	+		IAI47_13545	0.55	-2.2
2,873,957	+		IAI47_13545	0.55	+0.6
2,873,957	+		IAI47_13545	0.55	+0.0
2,873,957	+		IAI47_13545	0.55	-0.7
2,873,958	-		IAI47_13545	0.55	-1.4
2,873,958	-		IAI47_13545	0.55	+0.6
2,873,979	+		IAI47_13545	0.57	-1.9
2,873,979	+		IAI47_13545	0.57	-2.3
2,873,980	-		IAI47_13545	0.57	-1.0
2,873,983	+		IAI47_13545	0.58	-1.4
2,873,983	+		IAI47_13545	0.58	+0.0
2,873,983	+		IAI47_13545	0.58	+0.6
2,873,983	+		IAI47_13545	0.58	-2.0
2,873,983	+		IAI47_13545	0.58	-2.1
2,873,983	+		IAI47_13545	0.58	-2.2
2,873,983	+		IAI47_13545	0.58	+0.0
2,873,983	+		IAI47_13545	0.58	-2.1
2,873,983	+		IAI47_13545	0.58	-2.9
2,873,984	-		IAI47_13545	0.58	-0.8
2,873,984	-		IAI47_13545	0.58	-0.3
2,873,984	-		IAI47_13545	0.58	+0.0
2,873,984	-		IAI47_13545	0.58	-0.4
2,873,984	-		IAI47_13545	0.58	+0.6
2,873,984	-		IAI47_13545	0.58	-0.4
2,873,984	-		IAI47_13545	0.58	+2.1
2,873,984	-		IAI47_13545	0.58	-1.4
2,873,984	-		IAI47_13545	0.58	-1.8
2,873,984	-		IAI47_13545	0.58	-1.0
2,873,993	+		IAI47_13545	0.59	-1.2
2,873,993	+		IAI47_13545	0.59	-0.4
2,873,993	+		IAI47_13545	0.59	+0.2
2,873,993	+		IAI47_13545	0.59	-0.7
2,873,993	+		IAI47_13545	0.59	-2.1
2,873,994	-		IAI47_13545	0.59	-1.6
2,873,994	-		IAI47_13545	0.59	-1.9
2,873,994	-		IAI47_13545	0.59	-2.7
2,874,039	+		IAI47_13545	0.63	-1.9
2,874,040	-		IAI47_13545	0.63	+2.2
2,874,109	+		IAI47_13545	0.70	-2.8
2,874,109	+		IAI47_13545	0.70	+1.2
2,874,110	-		IAI47_13545	0.70	-1.8
2,874,110	-		IAI47_13545	0.70	-1.6