Strain Fitness in Pantoea sp. MT58 around IAI47_13275

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,805,724	+		IAI47_13270	0.29	-2.9
2,805,724	+		IAI47_13270	0.29	-0.2
2,805,724	+		IAI47_13270	0.29	+0.4
2,805,724	+		IAI47_13270	0.29	-0.4
2,805,724	+		IAI47_13270	0.29	+1.2
2,805,724	+		IAI47_13270	0.29	-1.0
2,805,724	+		IAI47_13270	0.29	+2.1
2,805,724	+		IAI47_13270	0.29	-2.5
2,805,725	-		IAI47_13270	0.29	-1.4
2,805,725	-		IAI47_13270	0.29	-0.3
2,805,730	+		IAI47_13270	0.29	-1.6
2,805,730	+		IAI47_13270	0.29	+0.5
2,805,730	+		IAI47_13270	0.29	-3.2
2,805,731	-		IAI47_13270	0.30	-1.9
2,805,731	-		IAI47_13270	0.30	+2.7
2,805,731	-		IAI47_13270	0.30	+0.3
2,805,731	-		IAI47_13270	0.30	+0.9
2,805,749	-		IAI47_13270	0.32	+1.2
2,805,764	-		IAI47_13270	0.34	+0.5
2,805,764	-		IAI47_13270	0.34	-1.1
2,805,971	+		IAI47_13270	0.61	+0.3
2,805,971	+		IAI47_13270	0.61	+3.2
2,805,971	+		IAI47_13270	0.61	+1.9
2,805,971	+		IAI47_13270	0.61	+0.6
2,805,971	+		IAI47_13270	0.61	-2.6
2,805,971	+		IAI47_13270	0.61	-1.0
2,805,972	-		IAI47_13270	0.62	-0.8
2,805,972	-		IAI47_13270	0.62	+0.0
2,805,972	-		IAI47_13270	0.62	-2.8
2,805,972	-		IAI47_13270	0.62	+0.1
2,805,972	-		IAI47_13270	0.62	+0.9
2,805,972	-		IAI47_13270	0.62	+1.0
2,805,972	-		IAI47_13270	0.62	+0.6
2,805,972	-		IAI47_13270	0.62	+0.0
2,805,972	-		IAI47_13270	0.62	-0.1
2,805,994	+		IAI47_13270	0.64	-3.0
2,805,994	+		IAI47_13270	0.64	-1.8
2,805,994	+		IAI47_13270	0.64	+0.0
2,805,995	-		IAI47_13270	0.65	+1.9
2,806,198	+				+0.5
2,806,198	+				-1.9
2,806,199	-				-2.1
2,806,199	-				-0.1
2,806,250	+				-0.3
2,806,251	-				+0.2
2,806,251	-				-0.9
2,806,274	+				-0.2
2,806,274	+				-1.6
2,806,274	+				-0.3
2,806,275	-				-1.2
2,806,275	-				-1.2
2,806,296	+				+0.4
2,806,317	+				-1.4
2,806,318	-				+0.3
2,806,318	-				-0.3
2,806,318	-				-0.7
2,806,320	-				-1.2
2,806,322	-				+1.2
2,806,322	-				+0.4
2,806,322	-				-0.7
2,806,394	+				+0.1
2,806,394	+				+0.6
2,806,394	+				+0.5
2,806,394	+				-3.5
2,806,394	+				+0.9
2,806,394	+				+0.6
2,806,394	+				+0.8
2,806,394	+				-0.2
2,806,395	-				-1.5
2,806,395	-				-0.2
2,806,395	-				-0.1
2,806,395	-				-3.2
2,806,395	-				-0.6
2,806,395	-				-0.4
2,806,395	-				+1.6
2,806,395	-				-0.6
2,806,503	+				+1.6
2,806,503	+				+0.6
2,806,503	+				-1.3
2,806,504	-				+0.6
2,806,571	+				+0.8
2,806,571	+				+0.0
2,806,572	-				-2.1
2,806,572	-				-1.0
2,806,572	-				-2.1
2,806,572	-				-2.6
2,806,583	+				-0.3
2,806,583	+				-0.7
2,806,584	-				+0.2
2,806,584	-				-1.8
2,806,588	+				+0.6
2,806,588	+				+0.4
2,806,589	-				+1.3
2,806,589	-				-0.7
2,806,589	-				+0.6
2,806,647	+				-1.5
2,806,655	-				+1.5
2,806,655	-				+0.8
2,806,658	+				+0.4
2,806,658	+				-0.0
2,806,658	+				+0.7
2,806,659	-				+1.4
2,806,659	-				+2.6
2,806,659	-				-2.7
2,806,659	-				+0.1
2,806,659	-				+0.7
2,806,676	+				+0.0
2,806,677	+				-1.6
2,806,678	-				-0.8
2,806,678	-				+0.1
2,806,678	-				-0.2
2,806,678	-				+0.2
2,806,728	+				-1.6
2,806,728	+				-0.7
2,806,728	+				-0.6
2,806,728	+				+1.6
2,806,728	+				-1.4
2,806,729	-				-1.7
2,806,729	-				-0.3
2,806,760	+		IAI47_13275	0.11	+1.0
2,806,760	+		IAI47_13275	0.11	-1.0
2,806,760	+		IAI47_13275	0.11	-0.3
2,806,760	+		IAI47_13275	0.11	-1.8
2,806,760	+		IAI47_13275	0.11	-1.6
2,806,760	+		IAI47_13275	0.11	-3.1
2,806,760	+		IAI47_13275	0.11	+1.1
2,806,760	+		IAI47_13275	0.11	+0.2
2,806,760	+		IAI47_13275	0.11	+2.3
2,806,761	-		IAI47_13275	0.11	+0.2
2,806,761	-		IAI47_13275	0.11	-0.6
2,806,761	-		IAI47_13275	0.11	-2.1
2,806,761	-		IAI47_13275	0.11	+0.8
2,806,761	-		IAI47_13275	0.11	+0.1
2,806,768	+		IAI47_13275	0.12	+1.0
2,806,768	+		IAI47_13275	0.12	+0.7
2,806,769	-		IAI47_13275	0.12	-1.0
2,806,769	-		IAI47_13275	0.12	+1.1
2,806,769	-		IAI47_13275	0.12	+0.4
2,806,769	-		IAI47_13275	0.12	-0.6
2,806,769	-		IAI47_13275	0.12	+1.0
2,806,769	-		IAI47_13275	0.12	-0.7
2,806,771	+		IAI47_13275	0.12	-1.0
2,806,771	+		IAI47_13275	0.12	+0.4
2,806,834	+		IAI47_13275	0.16	+0.7
2,806,834	+		IAI47_13275	0.16	+0.1
2,806,835	-		IAI47_13275	0.16	-1.2
2,806,835	-		IAI47_13275	0.16	+0.4
2,806,835	-		IAI47_13275	0.16	+1.1
2,806,835	-		IAI47_13275	0.16	-1.6
2,806,835	-		IAI47_13275	0.16	-0.4
2,806,981	+		IAI47_13275	0.25	+3.1
2,807,089	-		IAI47_13275	0.32	+0.4
2,807,089	-		IAI47_13275	0.32	-1.6
2,807,102	-		IAI47_13275	0.33	-0.6
2,807,320	+		IAI47_13275	0.47	+0.8
2,807,326	+		IAI47_13275	0.48	+2.0
2,807,326	+		IAI47_13275	0.48	+0.3
2,807,326	+		IAI47_13275	0.48	+0.5
2,807,327	-		IAI47_13275	0.48	+0.1
2,807,382	+		IAI47_13275	0.51	+0.6
2,807,382	+		IAI47_13275	0.51	-1.0
2,807,383	-		IAI47_13275	0.51	-0.6
2,807,410	+		IAI47_13275	0.53	-1.9
2,807,438	+		IAI47_13275	0.55	+1.2
2,807,438	+		IAI47_13275	0.55	+2.6
2,807,439	-		IAI47_13275	0.55	+0.3
2,807,617	+		IAI47_13275	0.66	-0.7
2,807,617	+		IAI47_13275	0.66	+1.4
2,807,618	-		IAI47_13275	0.66	+0.0
2,807,691	+		IAI47_13275	0.71	-1.1
2,807,691	+		IAI47_13275	0.71	+0.3
2,807,692	-		IAI47_13275	0.71	-0.7
2,807,743	+		IAI47_13275	0.74	+0.6
2,807,743	+		IAI47_13275	0.74	+0.3
2,807,743	+		IAI47_13275	0.74	+0.8
2,807,743	+		IAI47_13275	0.74	-2.9
2,807,811	+		IAI47_13275	0.79	+0.9
2,807,811	+		IAI47_13275	0.79	-3.0
2,807,812	-		IAI47_13275	0.79	+0.6
2,807,812	-		IAI47_13275	0.79	-0.0
2,807,812	-		IAI47_13275	0.79	-0.8
2,807,812	-		IAI47_13275	0.79	+0.3
2,807,864	+		IAI47_13275	0.82	-1.9
2,807,864	+		IAI47_13275	0.82	-0.6
2,807,864	+		IAI47_13275	0.82	+1.6
2,807,864	+		IAI47_13275	0.82	-0.3
2,807,864	+		IAI47_13275	0.82	-0.1
2,807,864	+		IAI47_13275	0.82	-0.6
2,807,865	-		IAI47_13275	0.82	+1.0
2,807,865	-		IAI47_13275	0.82	+3.6
2,807,896	+		IAI47_13275	0.84	-0.4
2,807,897	-		IAI47_13275	0.84	+1.9
2,807,918	-		IAI47_13275	0.86	+0.6
2,808,143	-				+0.6
2,808,155	-				+0.5
2,808,155	-				-2.2
2,808,311	+				-0.5
2,808,475	+		IAI47_13280	0.19	-0.1
2,808,476	-		IAI47_13280	0.19	-0.2
2,808,476	-		IAI47_13280	0.19	-0.1
2,808,523	+		IAI47_13280	0.22	-0.4
2,808,524	-		IAI47_13280	0.22	-1.7
2,808,542	+		IAI47_13280	0.23	+0.0
2,808,542	+		IAI47_13280	0.23	-2.1
2,808,542	+		IAI47_13280	0.23	-1.7
2,808,543	-		IAI47_13280	0.23	+0.9
2,808,543	-		IAI47_13280	0.23	-2.1
2,808,543	-		IAI47_13280	0.23	-2.2
2,808,543	-		IAI47_13280	0.23	+0.1
2,808,543	-		IAI47_13280	0.23	-0.4
2,808,543	-		IAI47_13280	0.23	+0.4
2,808,572	+		IAI47_13280	0.25	+0.3
2,808,572	+		IAI47_13280	0.25	+0.0
2,808,572	+		IAI47_13280	0.25	+0.2
2,808,572	+		IAI47_13280	0.25	+3.1
2,808,572	+		IAI47_13280	0.25	+1.4
2,808,572	+		IAI47_13280	0.25	-2.1
2,808,573	-		IAI47_13280	0.25	-0.4
2,808,573	-		IAI47_13280	0.25	+1.3
2,808,573	-		IAI47_13280	0.25	+1.6
2,808,573	-		IAI47_13280	0.25	-2.1
2,808,574	+		IAI47_13280	0.25	-0.6
2,808,574	+		IAI47_13280	0.25	-0.9
2,808,574	+		IAI47_13280	0.25	-0.5
2,808,574	+		IAI47_13280	0.25	+1.3
2,808,575	-		IAI47_13280	0.25	+0.3
2,808,575	-		IAI47_13280	0.25	-0.2
2,808,605	+		IAI47_13280	0.27	-0.7
2,808,605	+		IAI47_13280	0.27	+1.4
2,808,605	+		IAI47_13280	0.27	+0.0
2,808,605	+		IAI47_13280	0.27	-0.2
2,808,605	+		IAI47_13280	0.27	+2.2
2,808,606	-		IAI47_13280	0.27	-0.6
2,808,606	-		IAI47_13280	0.27	+2.2
2,808,606	-		IAI47_13280	0.27	+0.0
2,808,606	-		IAI47_13280	0.27	-1.3
2,808,606	-		IAI47_13280	0.27	+1.7
2,808,606	-		IAI47_13280	0.27	+1.3
2,808,638	+		IAI47_13280	0.29	-1.0
2,808,638	+		IAI47_13280	0.29	+1.6
2,808,638	+		IAI47_13280	0.29	+2.1
2,808,638	+		IAI47_13280	0.29	+0.0
2,808,639	-		IAI47_13280	0.29	-0.6
2,808,639	-		IAI47_13280	0.29	+0.2
2,808,639	-		IAI47_13280	0.29	+1.6
2,808,640	+		IAI47_13280	0.29	+1.6
2,808,641	-		IAI47_13280	0.29	-0.9
2,808,641	-		IAI47_13280	0.29	+0.3
2,808,641	-		IAI47_13280	0.29	-1.4
2,808,736	-		IAI47_13280	0.34	+0.6
2,808,788	+		IAI47_13280	0.38	+0.6
2,808,788	+		IAI47_13280	0.38	+0.1
2,808,789	-		IAI47_13280	0.38	-2.0
2,808,792	+		IAI47_13280	0.38	-1.9
2,808,793	-		IAI47_13280	0.38	+1.0
2,808,793	-		IAI47_13280	0.38	+0.3
2,808,793	-		IAI47_13280	0.38	-2.6
2,808,797	+		IAI47_13280	0.38	-1.6
2,808,798	-		IAI47_13280	0.38	+0.4
2,808,798	-		IAI47_13280	0.38	-0.4
2,808,981	+		IAI47_13280	0.49	-1.1
2,808,981	+		IAI47_13280	0.49	+1.3
2,808,982	-		IAI47_13280	0.49	+0.4
2,808,982	-		IAI47_13280	0.49	+1.4
2,808,982	-		IAI47_13280	0.49	+0.8
2,808,989	+		IAI47_13280	0.49	-0.4
2,808,989	+		IAI47_13280	0.49	-1.4
2,808,990	-		IAI47_13280	0.50	+1.1
2,809,075	+		IAI47_13280	0.55	-1.6
2,809,076	-		IAI47_13280	0.55	+1.6
2,809,114	+		IAI47_13280	0.57	+0.0
2,809,115	-		IAI47_13280	0.57	+1.4
2,809,121	-		IAI47_13280	0.57	+1.0
2,809,121	-		IAI47_13280	0.57	-2.4
2,809,136	+		IAI47_13280	0.58	+0.7
2,809,137	-		IAI47_13280	0.58	-3.1