Strain Fitness in Pantoea sp. MT58 around IAI47_10250

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,164,634	+				+1.0
2,164,635	-				+0.7
2,164,747	+		IAI47_10245	0.20	+0.4
2,164,747	+		IAI47_10245	0.20	-0.8
2,164,747	+		IAI47_10245	0.20	-0.5
2,164,747	+		IAI47_10245	0.20	+1.7
2,164,747	+		IAI47_10245	0.20	-1.5
2,164,747	+		IAI47_10245	0.20	-0.2
2,164,747	+		IAI47_10245	0.20	-0.5
2,164,747	+		IAI47_10245	0.20	+0.0
2,164,747	+		IAI47_10245	0.20	-2.5
2,164,747	+		IAI47_10245	0.20	-0.2
2,164,747	+		IAI47_10245	0.20	+1.4
2,164,747	+		IAI47_10245	0.20	+0.7
2,164,747	+		IAI47_10245	0.20	-0.9
2,164,748	-		IAI47_10245	0.20	+1.3
2,164,748	-		IAI47_10245	0.20	+0.7
2,164,748	-		IAI47_10245	0.20	+1.6
2,164,748	-		IAI47_10245	0.20	-1.9
2,164,748	-		IAI47_10245	0.20	+0.5
2,164,748	-		IAI47_10245	0.20	-3.4
2,164,748	-		IAI47_10245	0.20	-1.3
2,164,750	-		IAI47_10245	0.20	-1.8
2,164,750	-		IAI47_10245	0.20	+0.0
2,164,867	+		IAI47_10245	0.34	-2.3
2,164,867	+		IAI47_10245	0.34	-0.6
2,164,868	-		IAI47_10245	0.34	-0.7
2,164,966	+		IAI47_10245	0.46	+0.5
2,164,966	+		IAI47_10245	0.46	-0.1
2,164,966	+		IAI47_10245	0.46	+0.8
2,164,966	+		IAI47_10245	0.46	-2.4
2,164,967	-		IAI47_10245	0.46	-1.1
2,164,967	-		IAI47_10245	0.46	-0.0
2,165,087	+		IAI47_10245	0.60	-0.1
2,165,088	-		IAI47_10245	0.60	+1.4
2,165,088	-		IAI47_10245	0.60	+1.4
2,165,183	-		IAI47_10245	0.71	+0.6
2,165,183	-		IAI47_10245	0.71	+1.1
2,165,183	-		IAI47_10245	0.71	-0.3
2,165,294	+		IAI47_10245	0.84	-0.8
2,165,294	+		IAI47_10245	0.84	+1.4
2,165,349	-				-3.2
2,165,451	+				+0.7
2,165,452	-				+1.4
2,165,452	-				+2.7
2,165,452	-				+0.3
2,165,452	-				-1.5
2,165,483	+				+1.4
2,165,484	-				+0.5
2,165,484	-				-1.0
2,165,484	-				+3.1
2,165,484	-				+2.3
2,165,515	+				+1.0
2,165,547	+				-0.5
2,165,548	-				-0.6
2,165,568	+				-0.5
2,165,568	+				-0.8
2,165,569	-				-0.3
2,165,569	-				-1.6
2,165,569	-				-3.4
2,165,574	-				-1.2
2,165,602	+				-0.3
2,165,602	+				+0.7
2,165,602	+				+2.4
2,165,602	+				+0.6
2,165,603	-				-0.6
2,165,603	-				-2.6
2,165,603	-				-1.2
2,165,615	+				-1.4
2,165,627	-				-0.6
2,165,636	-				-0.3
2,165,636	-				-2.2
2,165,714	+				+4.2
2,165,715	-				-1.0
2,165,715	-				-0.5
2,165,883	+		IAI47_10250	0.12	+1.0
2,165,884	-		IAI47_10250	0.12	+1.4
2,165,884	-		IAI47_10250	0.12	-2.9
2,165,884	-		IAI47_10250	0.12	-0.3
2,165,934	+		IAI47_10250	0.14	-0.6
2,165,958	+		IAI47_10250	0.16	-0.9
2,165,958	+		IAI47_10250	0.16	-0.6
2,165,959	-		IAI47_10250	0.16	+1.5
2,165,959	-		IAI47_10250	0.16	+1.0
2,166,011	+		IAI47_10250	0.18	+1.6
2,166,012	-		IAI47_10250	0.18	+1.4
2,166,012	-		IAI47_10250	0.18	-1.6
2,166,069	+		IAI47_10250	0.21	-2.1
2,166,069	+		IAI47_10250	0.21	+2.4
2,166,069	+		IAI47_10250	0.21	+1.4
2,166,069	+		IAI47_10250	0.21	+1.0
2,166,069	+		IAI47_10250	0.21	-1.4
2,166,070	-		IAI47_10250	0.21	+2.4
2,166,070	-		IAI47_10250	0.21	+2.3
2,166,070	-		IAI47_10250	0.21	-0.4
2,166,070	-		IAI47_10250	0.21	-3.3
2,166,159	+		IAI47_10250	0.25	-0.2
2,166,159	+		IAI47_10250	0.25	+0.7
2,166,159	+		IAI47_10250	0.25	+0.8
2,166,160	-		IAI47_10250	0.25	-0.8
2,166,160	-		IAI47_10250	0.25	+0.8
2,166,160	-		IAI47_10250	0.25	+2.7
2,166,160	-		IAI47_10250	0.25	+1.4
2,166,160	-		IAI47_10250	0.25	+0.1
2,166,231	+		IAI47_10250	0.28	+0.9
2,166,232	-		IAI47_10250	0.28	+1.1
2,166,232	-		IAI47_10250	0.28	+4.5
2,166,232	-		IAI47_10250	0.28	+0.1
2,166,356	+		IAI47_10250	0.34	+0.3
2,166,430	+		IAI47_10250	0.38	+0.4
2,166,430	+		IAI47_10250	0.38	+2.0
2,166,430	+		IAI47_10250	0.38	+0.6
2,166,431	-		IAI47_10250	0.38	+0.9
2,166,450	+		IAI47_10250	0.39	+0.8
2,166,450	+		IAI47_10250	0.39	-1.9
2,166,450	+		IAI47_10250	0.39	-0.9
2,166,450	+		IAI47_10250	0.39	-0.2
2,166,450	+		IAI47_10250	0.39	-0.9
2,166,450	+		IAI47_10250	0.39	-1.6
2,166,451	-		IAI47_10250	0.39	-1.4
2,166,451	-		IAI47_10250	0.39	+0.4
2,166,451	-		IAI47_10250	0.39	+2.2
2,166,452	+		IAI47_10250	0.39	-0.6
2,166,452	+		IAI47_10250	0.39	-1.1
2,166,452	+		IAI47_10250	0.39	+0.4
2,166,452	+		IAI47_10250	0.39	+0.8
2,166,453	-		IAI47_10250	0.39	+0.4
2,166,462	-		IAI47_10250	0.39	-2.2
2,166,462	-		IAI47_10250	0.39	+0.7
2,166,462	-		IAI47_10250	0.39	+0.8
2,166,462	-		IAI47_10250	0.39	+1.1
2,166,496	-		IAI47_10250	0.41	-0.9
2,166,540	+		IAI47_10250	0.43	+0.7
2,166,541	-		IAI47_10250	0.43	+2.7
2,166,639	+		IAI47_10250	0.48	-0.0
2,166,640	-		IAI47_10250	0.48	-1.9
2,166,640	-		IAI47_10250	0.48	+0.7
2,166,640	-		IAI47_10250	0.48	-0.9
2,166,717	+		IAI47_10250	0.51	+1.4
2,166,747	+		IAI47_10250	0.53	+0.7
2,166,747	+		IAI47_10250	0.53	-1.6
2,166,747	+		IAI47_10250	0.53	+2.3
2,166,747	+		IAI47_10250	0.53	+0.9
2,166,748	-		IAI47_10250	0.53	+1.8
2,166,748	-		IAI47_10250	0.53	+0.1
2,166,843	+		IAI47_10250	0.57	+0.9
2,166,844	-		IAI47_10250	0.57	-0.9
2,166,873	-		IAI47_10250	0.59	+2.3
2,166,933	+		IAI47_10250	0.62	+0.9
2,166,933	+		IAI47_10250	0.62	-0.0
2,166,933	+		IAI47_10250	0.62	-2.3
2,166,933	+		IAI47_10250	0.62	-0.9
2,166,933	+		IAI47_10250	0.62	-2.2
2,166,933	+		IAI47_10250	0.62	+1.7
2,166,933	+		IAI47_10250	0.62	-0.2
2,166,933	+		IAI47_10250	0.62	-0.7
2,166,933	+		IAI47_10250	0.62	+1.4
2,166,933	+		IAI47_10250	0.62	-0.6
2,166,934	-		IAI47_10250	0.62	-0.6
2,166,934	-		IAI47_10250	0.62	+1.4
2,166,934	-		IAI47_10250	0.62	-0.2
2,166,934	-		IAI47_10250	0.62	+1.5
2,166,934	-		IAI47_10250	0.62	+0.9
2,166,934	-		IAI47_10250	0.62	-0.5
2,166,934	-		IAI47_10250	0.62	+0.7
2,166,934	-		IAI47_10250	0.62	+0.4
2,166,934	-		IAI47_10250	0.62	+2.0
2,166,934	-		IAI47_10250	0.62	-0.4
2,166,934	-		IAI47_10250	0.62	+2.0
2,166,934	-		IAI47_10250	0.62	+2.3
2,166,975	+		IAI47_10250	0.64	+3.0
2,167,008	+		IAI47_10250	0.65	+0.7
2,167,008	+		IAI47_10250	0.65	+3.2
2,167,009	-		IAI47_10250	0.65	-2.8
2,167,035	+		IAI47_10250	0.66	-1.5
2,167,035	+		IAI47_10250	0.66	+0.7
2,167,074	-		IAI47_10250	0.68	-1.4
2,167,260	+		IAI47_10250	0.77	-2.7
2,167,260	+		IAI47_10250	0.77	+1.3
2,167,260	+		IAI47_10250	0.77	-0.6
2,167,260	+		IAI47_10250	0.77	+0.4
2,167,260	+		IAI47_10250	0.77	+0.8
2,167,261	-		IAI47_10250	0.77	-0.6
2,167,261	-		IAI47_10250	0.77	+1.7
2,167,262	+		IAI47_10250	0.77	-1.6
2,167,262	+		IAI47_10250	0.77	-1.6
2,167,262	+		IAI47_10250	0.77	+1.1
2,167,262	+		IAI47_10250	0.77	+0.6
2,167,263	-		IAI47_10250	0.77	-0.4
2,167,263	-		IAI47_10250	0.77	-2.2
2,167,301	-		IAI47_10250	0.79	-1.5
2,167,301	-		IAI47_10250	0.79	+1.4
2,167,301	-		IAI47_10250	0.79	-0.1
2,167,301	-		IAI47_10250	0.79	+0.4
2,167,349	+		IAI47_10250	0.81	+0.6
2,167,349	+		IAI47_10250	0.81	-0.3
2,167,350	-		IAI47_10250	0.81	-1.1
2,167,441	-		IAI47_10250	0.85	-0.1
2,167,441	-		IAI47_10250	0.85	-0.3
2,167,455	+		IAI47_10250	0.86	+1.1
2,167,476	+		IAI47_10250	0.87	+2.3
2,167,477	-		IAI47_10250	0.87	-0.9
2,167,497	+		IAI47_10250	0.88	-0.2
2,167,498	-		IAI47_10250	0.88	-0.9
2,167,538	+				+0.2
2,167,548	+				+1.7
2,167,548	+				+0.4
2,167,549	-				-1.0
2,167,549	-				+0.6
2,167,549	-				+1.0
2,167,576	-				-0.2
2,167,577	+				+0.4
2,167,577	+				-0.7
2,167,577	+				+0.3
2,167,577	+				-0.5
2,167,577	+				-0.9
2,167,577	+				+0.8
2,167,577	+				+1.2
2,167,577	+				+0.9
2,167,577	+				+2.7
2,167,577	+				+1.1
2,167,577	+				-1.8
2,167,578	-				+0.7
2,167,578	-				-2.8
2,167,578	-				+0.7
2,167,578	-				+0.0
2,167,578	-				+1.2
2,167,644	+				-1.2
2,167,644	+				-0.4
2,167,644	+				-1.7
2,167,644	+				-0.1
2,167,644	+				-2.3
2,167,644	+				+3.4
2,167,644	+				+1.9
2,167,644	+				+1.6
2,167,645	-				-2.2
2,167,645	-				+1.7
2,167,645	-				+1.1
2,167,645	-				-0.2
2,167,645	-				+0.4
2,167,645	-				+2.9
2,167,645	-				-0.2
2,167,645	-				-1.1
2,167,673	+				+0.5
2,167,673	+				-1.6
2,167,674	-				-0.2
2,167,674	-				+0.4
2,167,674	-				+2.0
2,167,674	-				+0.8
2,167,707	-				-0.2
2,167,707	-				-0.1
2,167,710	+				+0.2
2,167,710	+				+0.7
2,167,710	+				-0.8
2,167,710	+				+0.0
2,167,710	+				+0.9
2,167,710	+				+1.6
2,167,710	-				+1.2
2,167,711	-				-2.1
2,167,711	-				+1.8
2,167,711	-				-1.4
2,167,711	-				-0.5
2,167,711	-				+0.8
2,167,711	-				-1.4
2,167,711	-				-0.0
2,167,711	-				+0.8
2,167,734	+				-2.0
2,167,735	-				+1.2
2,167,746	+				+2.2
2,167,747	-				+1.6
2,167,784	-				+1.4
2,167,819	+				-2.5
2,167,819	+				+1.7
2,167,820	-				-0.1
2,167,820	-				-0.2
2,167,822	+				+1.6
2,167,822	+				+1.4
2,167,823	-				+1.4
2,167,823	-				+0.4
2,167,868	+		IAI47_10255	0.13	-0.8
2,167,885	+		IAI47_10255	0.16	+1.0
2,167,932	+		IAI47_10255	0.25	-0.9
2,167,944	+		IAI47_10255	0.27	-0.9
2,167,945	-		IAI47_10255	0.27	-0.2
2,167,945	-		IAI47_10255	0.27	+0.7
2,167,945	-		IAI47_10255	0.27	+4.2
2,167,945	-		IAI47_10255	0.27	-0.0
2,167,987	+		IAI47_10255	0.35	+0.6
2,168,191	+		IAI47_10255	0.71	-1.2
2,168,311	+				+2.0
2,168,314	+				-0.9
2,168,314	+				+1.4
2,168,314	+				+1.4
2,168,315	-				-2.1
2,168,315	-				+1.0
2,168,315	-				-0.2
2,168,370	+				-3.2
2,168,371	-				+2.6
2,168,371	-				+1.4
2,168,380	+				+0.5
2,168,381	-				-0.6
2,168,381	-				+1.6
2,168,381	-				-1.1
2,168,393	+				-1.3
2,168,393	+				-1.8
2,168,393	+				+2.1
2,168,394	-				+0.2
2,168,394	-				-0.6
2,168,394	-				-3.9
2,168,434	+		IAI47_10260	0.15	+1.0
2,168,435	-		IAI47_10260	0.15	+0.1
2,168,491	+		IAI47_10260	0.29	-2.6
2,168,491	+		IAI47_10260	0.29	+0.7
2,168,492	-		IAI47_10260	0.29	-2.4
2,168,492	-		IAI47_10260	0.29	-0.8
2,168,614	+		IAI47_10260	0.58	+0.4
2,168,614	+		IAI47_10260	0.58	-4.1
2,168,615	-		IAI47_10260	0.58	+0.3
2,168,615	-		IAI47_10260	0.58	-1.9
2,168,615	-		IAI47_10260	0.58	-0.5
2,168,615	-		IAI47_10260	0.58	+1.1
2,168,618	+		IAI47_10260	0.58	-1.2
2,168,618	+		IAI47_10260	0.58	-0.3
2,168,618	+		IAI47_10260	0.58	-0.7
2,168,618	+		IAI47_10260	0.58	-1.9
2,168,618	+		IAI47_10260	0.58	-0.9
2,168,618	+		IAI47_10260	0.58	-0.0
2,168,618	+		IAI47_10260	0.58	-2.2
2,168,618	+		IAI47_10260	0.58	+0.1
2,168,618	+		IAI47_10260	0.58	-0.2
2,168,619	-		IAI47_10260	0.59	-0.4
2,168,619	-		IAI47_10260	0.59	-0.9
2,168,619	-		IAI47_10260	0.59	-1.0
2,168,619	-		IAI47_10260	0.59	-1.0
2,168,619	-		IAI47_10260	0.59	-1.1
2,168,619	-		IAI47_10260	0.59	-0.3
2,168,619	-		IAI47_10260	0.59	+0.6
2,168,619	-		IAI47_10260	0.59	+0.9
2,168,619	-		IAI47_10260	0.59	+0.8
2,168,619	-		IAI47_10260	0.59	-0.2
2,168,678	+		IAI47_10260	0.73	-0.4