Strain Fitness in Pantoea sp. MT58 around IAI47_07765

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07755 and IAI47_07760 overlap by 1 nucleotidesIAI47_07760 and IAI47_07765 overlap by 1 nucleotidesIAI47_07765 and IAI47_07770 overlap by 8 nucleotidesIAI47_07770 and IAI47_07775 overlap by 11 nucleotides IAI47_07755: IAI47_07755 - phosphonate C-P lyase system protein PhnG, at 1,643,849 to 1,644,295 _07755 IAI47_07760: IAI47_07760 - phosphonate C-P lyase system protein PhnH, at 1,644,295 to 1,644,870 _07760 IAI47_07765: IAI47_07765 - carbon-phosphorus lyase complex subunit PhnI, at 1,644,870 to 1,645,946 _07765 IAI47_07770: IAI47_07770 - alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ, at 1,645,939 to 1,646,787 _07770 IAI47_07775: IAI47_07775 - phosphonate C-P lyase system protein PhnK, at 1,646,777 to 1,647,538 _07775 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1644.086 kb on + strand, within IAI47_07755at 1644.087 kb on - strand, within IAI47_07755at 1644.092 kb on + strand, within IAI47_07755at 1644.092 kb on + strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.093 kb on - strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.190 kb on + strand, within IAI47_07755at 1644.191 kb on - strand, within IAI47_07755at 1644.191 kb on - strand, within IAI47_07755at 1644.193 kb on + strand, within IAI47_07755at 1644.262 kb on - strandat 1644.289 kb on + strandat 1644.289 kb on + strandat 1644.290 kb on - strandat 1644.290 kb on - strandat 1644.290 kb on - strandat 1644.302 kb on + strandat 1644.302 kb on + strandat 1644.303 kb on - strandat 1644.303 kb on - strandat 1644.315 kb on + strandat 1644.315 kb on + strandat 1644.513 kb on + strand, within IAI47_07760at 1644.514 kb on - strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.627 kb on + strand, within IAI47_07760at 1644.628 kb on - strand, within IAI47_07760at 1644.628 kb on - strand, within IAI47_07760at 1644.729 kb on + strand, within IAI47_07760at 1644.729 kb on + strand, within IAI47_07760at 1644.729 kb on + strand, within IAI47_07760at 1644.730 kb on - strand, within IAI47_07760at 1644.730 kb on - strand, within IAI47_07760at 1644.873 kb on + strandat 1644.873 kb on + strandat 1644.873 kb on + strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.874 kb on - strandat 1644.909 kb on - strandat 1645.030 kb on + strand, within IAI47_07765at 1645.030 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.032 kb on + strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.033 kb on - strand, within IAI47_07765at 1645.061 kb on + strand, within IAI47_07765at 1645.062 kb on - strand, within IAI47_07765at 1645.194 kb on + strand, within IAI47_07765at 1645.194 kb on + strand, within IAI47_07765at 1645.194 kb on + strand, within IAI47_07765at 1645.195 kb on - strand, within IAI47_07765at 1645.195 kb on - strand, within IAI47_07765at 1645.195 kb on - strand, within IAI47_07765at 1645.197 kb on - strand, within IAI47_07765at 1645.197 kb on - strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.233 kb on + strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.234 kb on - strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.239 kb on + strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.240 kb on - strand, within IAI47_07765at 1645.404 kb on - strand, within IAI47_07765at 1645.404 kb on - strand, within IAI47_07765at 1645.557 kb on + strand, within IAI47_07765at 1645.924 kb on - strandat 1645.957 kb on + strandat 1645.959 kb on + strandat 1645.959 kb on + strandat 1645.959 kb on + strandat 1645.960 kb on - strandat 1645.960 kb on - strandat 1645.960 kb on - strandat 1645.960 kb on - strandat 1645.969 kb on + strandat 1645.970 kb on - strandat 1645.970 kb on - strandat 1646.074 kb on + strand, within IAI47_07770at 1646.086 kb on - strand, within IAI47_07770at 1646.183 kb on + strand, within IAI47_07770at 1646.183 kb on + strand, within IAI47_07770at 1646.183 kb on + strand, within IAI47_07770at 1646.183 kb on + strand, within IAI47_07770at 1646.184 kb on - strand, within IAI47_07770at 1646.303 kb on + strand, within IAI47_07770at 1646.386 kb on + strand, within IAI47_07770at 1646.387 kb on - strand, within IAI47_07770at 1646.387 kb on - strand, within IAI47_07770at 1646.410 kb on + strand, within IAI47_07770at 1646.410 kb on + strand, within IAI47_07770at 1646.411 kb on - strand, within IAI47_07770at 1646.411 kb on - strand, within IAI47_07770at 1646.418 kb on + strand, within IAI47_07770at 1646.419 kb on - strand, within IAI47_07770at 1646.419 kb on - strand, within IAI47_07770at 1646.437 kb on - strand, within IAI47_07770at 1646.449 kb on + strand, within IAI47_07770at 1646.449 kb on + strand, within IAI47_07770at 1646.449 kb on + strand, within IAI47_07770at 1646.449 kb on + strand, within IAI47_07770at 1646.449 kb on + strand, within IAI47_07770at 1646.449 kb on + strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.450 kb on - strand, within IAI47_07770at 1646.479 kb on + strand, within IAI47_07770at 1646.479 kb on + strand, within IAI47_07770at 1646.480 kb on - strand, within IAI47_07770at 1646.578 kb on + strand, within IAI47_07770at 1646.579 kb on - strand, within IAI47_07770at 1646.579 kb on - strand, within IAI47_07770at 1646.579 kb on - strand, within IAI47_07770at 1646.593 kb on + strand, within IAI47_07770at 1646.593 kb on + strand, within IAI47_07770at 1646.594 kb on - strand, within IAI47_07770at 1646.595 kb on + strand, within IAI47_07770at 1646.686 kb on + strand, within IAI47_07770at 1646.686 kb on + strand, within IAI47_07770at 1646.686 kb on + strand, within IAI47_07770at 1646.687 kb on - strand, within IAI47_07770at 1646.687 kb on - strand, within IAI47_07770at 1646.687 kb on - strand, within IAI47_07770at 1646.687 kb on - strand, within IAI47_07770at 1646.825 kb on + strandat 1646.825 kb on + strandat 1646.825 kb on + strandat 1646.826 kb on - strandat 1646.826 kb on - strandat 1646.826 kb on - strandat 1646.826 kb on - strandat 1646.880 kb on + strand, within IAI47_07775at 1646.880 kb on + strand, within IAI47_07775at 1646.881 kb on - strand, within IAI47_07775at 1646.881 kb on - strand, within IAI47_07775at 1646.912 kb on - strand, within IAI47_07775

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,644,086 + IAI47_07755 0.53 -0.6
1,644,087 - IAI47_07755 0.53 +0.1
1,644,092 + IAI47_07755 0.54 +0.8
1,644,092 + IAI47_07755 0.54 -1.9
1,644,093 - IAI47_07755 0.55 +1.7
1,644,093 - IAI47_07755 0.55 +0.6
1,644,093 - IAI47_07755 0.55 +0.5
1,644,093 - IAI47_07755 0.55 -0.3
1,644,093 - IAI47_07755 0.55 -4.9
1,644,093 - IAI47_07755 0.55 -2.9
1,644,093 - IAI47_07755 0.55 -0.9
1,644,190 + IAI47_07755 0.76 -1.6
1,644,190 + IAI47_07755 0.76 -1.5
1,644,190 + IAI47_07755 0.76 +0.0
1,644,190 + IAI47_07755 0.76 -1.6
1,644,191 - IAI47_07755 0.77 +0.2
1,644,191 - IAI47_07755 0.77 -0.4
1,644,193 + IAI47_07755 0.77 -1.6
1,644,262 - +1.8
1,644,289 + +0.9
1,644,289 + +1.6
1,644,290 - -1.1
1,644,290 - -0.6
1,644,290 - -1.7
1,644,302 + +0.4
1,644,302 + +2.0
1,644,303 - +2.4
1,644,303 - -0.6
1,644,315 + -2.7
1,644,315 + +1.2
1,644,513 + IAI47_07760 0.38 +0.3
1,644,514 - IAI47_07760 0.38 -0.2
1,644,627 + IAI47_07760 0.58 +0.7
1,644,627 + IAI47_07760 0.58 -0.4
1,644,627 + IAI47_07760 0.58 +1.8
1,644,627 + IAI47_07760 0.58 +1.7
1,644,627 + IAI47_07760 0.58 +1.7
1,644,628 - IAI47_07760 0.58 -1.4
1,644,628 - IAI47_07760 0.58 -1.2
1,644,729 + IAI47_07760 0.75 -0.9
1,644,729 + IAI47_07760 0.75 +1.4
1,644,729 + IAI47_07760 0.75 +1.2
1,644,730 - IAI47_07760 0.76 +1.1
1,644,730 - IAI47_07760 0.76 +0.0
1,644,873 + +1.8
1,644,873 + -0.7
1,644,873 + +2.0
1,644,874 - +2.9
1,644,874 - -1.0
1,644,874 - -1.2
1,644,874 - -0.6
1,644,874 - -0.4
1,644,874 - -1.0
1,644,874 - +0.4
1,644,874 - +1.3
1,644,874 - -2.6
1,644,874 - -0.4
1,644,874 - +1.5
1,644,909 - +0.9
1,645,030 + IAI47_07765 0.15 +1.4
1,645,030 + IAI47_07765 0.15 +0.6
1,645,032 + IAI47_07765 0.15 +3.0
1,645,032 + IAI47_07765 0.15 +0.2
1,645,032 + IAI47_07765 0.15 +0.9
1,645,032 + IAI47_07765 0.15 +0.5
1,645,032 + IAI47_07765 0.15 +1.4
1,645,033 - IAI47_07765 0.15 +2.3
1,645,033 - IAI47_07765 0.15 -1.2
1,645,033 - IAI47_07765 0.15 +0.4
1,645,033 - IAI47_07765 0.15 +0.4
1,645,033 - IAI47_07765 0.15 +0.9
1,645,061 + IAI47_07765 0.18 +1.8
1,645,062 - IAI47_07765 0.18 +1.4
1,645,194 + IAI47_07765 0.30 +0.2
1,645,194 + IAI47_07765 0.30 +1.4
1,645,194 + IAI47_07765 0.30 -1.4
1,645,195 - IAI47_07765 0.30 -1.6
1,645,195 - IAI47_07765 0.30 -1.9
1,645,195 - IAI47_07765 0.30 +0.3
1,645,197 - IAI47_07765 0.30 -1.3
1,645,197 - IAI47_07765 0.30 -1.3
1,645,233 + IAI47_07765 0.34 -1.1
1,645,233 + IAI47_07765 0.34 -1.0
1,645,233 + IAI47_07765 0.34 +1.6
1,645,233 + IAI47_07765 0.34 +0.1
1,645,233 + IAI47_07765 0.34 -0.1
1,645,233 + IAI47_07765 0.34 -0.6
1,645,234 - IAI47_07765 0.34 -2.7
1,645,234 - IAI47_07765 0.34 -0.2
1,645,234 - IAI47_07765 0.34 -1.3
1,645,234 - IAI47_07765 0.34 -0.2
1,645,239 + IAI47_07765 0.34 +0.1
1,645,239 + IAI47_07765 0.34 -1.0
1,645,239 + IAI47_07765 0.34 -1.2
1,645,239 + IAI47_07765 0.34 +0.4
1,645,239 + IAI47_07765 0.34 -1.6
1,645,240 - IAI47_07765 0.34 -0.2
1,645,240 - IAI47_07765 0.34 +0.8
1,645,240 - IAI47_07765 0.34 +0.1
1,645,240 - IAI47_07765 0.34 -0.6
1,645,240 - IAI47_07765 0.34 -0.1
1,645,404 - IAI47_07765 0.50 +1.6
1,645,404 - IAI47_07765 0.50 +0.8
1,645,557 + IAI47_07765 0.64 +0.4
1,645,924 - -0.7
1,645,957 + -1.8
1,645,959 + -0.9
1,645,959 + +0.7
1,645,959 + -0.1
1,645,960 - -0.5
1,645,960 - -0.7
1,645,960 - +0.2
1,645,960 - +0.6
1,645,969 + -1.2
1,645,970 - +1.9
1,645,970 - -1.3
1,646,074 + IAI47_07770 0.16 -0.5
1,646,086 - IAI47_07770 0.17 -2.0
1,646,183 + IAI47_07770 0.29 -3.3
1,646,183 + IAI47_07770 0.29 -2.2
1,646,183 + IAI47_07770 0.29 -0.0
1,646,183 + IAI47_07770 0.29 -2.9
1,646,184 - IAI47_07770 0.29 +2.7
1,646,303 + IAI47_07770 0.43 +0.8
1,646,386 + IAI47_07770 0.53 -1.2
1,646,387 - IAI47_07770 0.53 +0.1
1,646,387 - IAI47_07770 0.53 +1.0
1,646,410 + IAI47_07770 0.55 -0.6
1,646,410 + IAI47_07770 0.55 +1.4
1,646,411 - IAI47_07770 0.56 +0.4
1,646,411 - IAI47_07770 0.56 -1.2
1,646,418 + IAI47_07770 0.56 -0.0
1,646,419 - IAI47_07770 0.57 -0.1
1,646,419 - IAI47_07770 0.57 -0.1
1,646,437 - IAI47_07770 0.59 -1.2
1,646,449 + IAI47_07770 0.60 +2.9
1,646,449 + IAI47_07770 0.60 -0.9
1,646,449 + IAI47_07770 0.60 +0.1
1,646,449 + IAI47_07770 0.60 -0.2
1,646,449 + IAI47_07770 0.60 -0.4
1,646,449 + IAI47_07770 0.60 +0.1
1,646,450 - IAI47_07770 0.60 -1.5
1,646,450 - IAI47_07770 0.60 -0.8
1,646,450 - IAI47_07770 0.60 -1.5
1,646,450 - IAI47_07770 0.60 -1.9
1,646,450 - IAI47_07770 0.60 -3.4
1,646,450 - IAI47_07770 0.60 -0.0
1,646,450 - IAI47_07770 0.60 -0.2
1,646,450 - IAI47_07770 0.60 -0.4
1,646,479 + IAI47_07770 0.64 +0.4
1,646,479 + IAI47_07770 0.64 -3.7
1,646,480 - IAI47_07770 0.64 +0.1
1,646,578 + IAI47_07770 0.75 -0.4
1,646,579 - IAI47_07770 0.75 +1.4
1,646,579 - IAI47_07770 0.75 +1.4
1,646,579 - IAI47_07770 0.75 -1.4
1,646,593 + IAI47_07770 0.77 -1.7
1,646,593 + IAI47_07770 0.77 -2.2
1,646,594 - IAI47_07770 0.77 +0.6
1,646,595 + IAI47_07770 0.77 -1.2
1,646,686 + IAI47_07770 0.88 +0.3
1,646,686 + IAI47_07770 0.88 +2.7
1,646,686 + IAI47_07770 0.88 -1.9
1,646,687 - IAI47_07770 0.88 -3.0
1,646,687 - IAI47_07770 0.88 -0.3
1,646,687 - IAI47_07770 0.88 -0.2
1,646,687 - IAI47_07770 0.88 +1.4
1,646,825 + +1.4
1,646,825 + +1.4
1,646,825 + +2.9
1,646,826 - -0.6
1,646,826 - +1.4
1,646,826 - -0.1
1,646,826 - -2.0
1,646,880 + IAI47_07775 0.14 -1.9
1,646,880 + IAI47_07775 0.14 +1.7
1,646,881 - IAI47_07775 0.14 -3.2
1,646,881 - IAI47_07775 0.14 +0.9
1,646,912 - IAI47_07775 0.18 +1.2

Or see this region's nucleotide sequence