Strain Fitness in Pantoea sp. MT58 around IAI47_04305

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04300 and IAI47_04305 are separated by 124 nucleotidesIAI47_04305 and IAI47_04310 are separated by 133 nucleotides IAI47_04300: IAI47_04300 - recombinase RecA, at 905,642 to 906,712 _04300 IAI47_04305: IAI47_04305 - regulatory protein RecX, at 906,837 to 907,355 _04305 IAI47_04310: IAI47_04310 - alanine--tRNA ligase, at 907,489 to 910,116 _04310 Position (kb) 906 907 908Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 905.837 kb on + strand, within IAI47_04300at 905.837 kb on + strand, within IAI47_04300at 905.921 kb on - strand, within IAI47_04300at 905.970 kb on + strand, within IAI47_04300at 906.097 kb on + strand, within IAI47_04300at 906.151 kb on + strand, within IAI47_04300at 906.151 kb on + strand, within IAI47_04300at 906.151 kb on + strand, within IAI47_04300at 906.152 kb on - strand, within IAI47_04300at 906.152 kb on - strand, within IAI47_04300at 906.152 kb on - strand, within IAI47_04300at 906.152 kb on - strand, within IAI47_04300at 906.152 kb on - strand, within IAI47_04300at 906.199 kb on + strand, within IAI47_04300at 906.199 kb on + strand, within IAI47_04300at 906.200 kb on - strand, within IAI47_04300at 906.232 kb on + strand, within IAI47_04300at 906.233 kb on - strand, within IAI47_04300at 906.233 kb on - strand, within IAI47_04300at 906.296 kb on + strand, within IAI47_04300at 906.297 kb on - strand, within IAI47_04300at 906.349 kb on + strand, within IAI47_04300at 906.434 kb on + strand, within IAI47_04300at 906.434 kb on + strand, within IAI47_04300at 906.434 kb on + strand, within IAI47_04300at 906.434 kb on + strand, within IAI47_04300at 906.434 kb on + strand, within IAI47_04300at 906.434 kb on + strand, within IAI47_04300at 906.435 kb on - strand, within IAI47_04300at 906.435 kb on - strand, within IAI47_04300at 906.435 kb on - strand, within IAI47_04300at 906.435 kb on - strand, within IAI47_04300at 906.435 kb on - strand, within IAI47_04300at 906.435 kb on - strand, within IAI47_04300at 906.445 kb on + strand, within IAI47_04300at 906.446 kb on - strand, within IAI47_04300at 906.451 kb on + strand, within IAI47_04300at 906.451 kb on + strand, within IAI47_04300at 906.451 kb on + strand, within IAI47_04300at 906.515 kb on + strand, within IAI47_04300at 906.521 kb on + strand, within IAI47_04300at 906.521 kb on + strand, within IAI47_04300at 906.521 kb on + strand, within IAI47_04300at 906.521 kb on + strand, within IAI47_04300at 906.521 kb on + strand, within IAI47_04300at 906.521 kb on + strand, within IAI47_04300at 906.522 kb on - strand, within IAI47_04300at 906.522 kb on - strand, within IAI47_04300at 906.522 kb on - strand, within IAI47_04300at 906.522 kb on - strand, within IAI47_04300at 906.701 kb on + strandat 906.710 kb on + strandat 906.710 kb on + strandat 906.711 kb on - strandat 906.711 kb on - strandat 906.711 kb on - strandat 906.766 kb on + strandat 906.766 kb on + strandat 906.767 kb on - strandat 906.767 kb on - strandat 906.767 kb on - strandat 906.804 kb on + strandat 906.805 kb on - strandat 906.805 kb on - strandat 906.805 kb on - strandat 906.805 kb on - strandat 906.805 kb on - strandat 906.822 kb on + strandat 906.822 kb on + strandat 906.823 kb on - strandat 906.836 kb on + strandat 906.837 kb on - strandat 906.837 kb on - strandat 906.837 kb on - strandat 906.837 kb on - strandat 906.876 kb on + strandat 906.877 kb on - strandat 906.877 kb on - strandat 906.905 kb on + strand, within IAI47_04305at 906.905 kb on + strand, within IAI47_04305at 906.905 kb on + strand, within IAI47_04305at 906.906 kb on - strand, within IAI47_04305at 906.906 kb on - strand, within IAI47_04305at 906.906 kb on - strand, within IAI47_04305at 906.906 kb on - strand, within IAI47_04305at 906.906 kb on - strand, within IAI47_04305at 906.906 kb on - strand, within IAI47_04305at 906.940 kb on + strand, within IAI47_04305at 906.948 kb on - strand, within IAI47_04305at 906.948 kb on - strand, within IAI47_04305at 906.948 kb on - strand, within IAI47_04305at 906.948 kb on - strand, within IAI47_04305at 907.030 kb on + strand, within IAI47_04305at 907.030 kb on + strand, within IAI47_04305at 907.030 kb on + strand, within IAI47_04305at 907.031 kb on - strand, within IAI47_04305at 907.031 kb on - strand, within IAI47_04305at 907.077 kb on - strand, within IAI47_04305at 907.088 kb on + strand, within IAI47_04305at 907.089 kb on - strand, within IAI47_04305at 907.283 kb on - strand, within IAI47_04305at 907.283 kb on - strand, within IAI47_04305at 907.283 kb on - strand, within IAI47_04305at 907.285 kb on + strand, within IAI47_04305at 907.285 kb on + strand, within IAI47_04305at 907.286 kb on - strand, within IAI47_04305at 907.286 kb on - strand, within IAI47_04305at 907.286 kb on - strand, within IAI47_04305at 907.286 kb on - strand, within IAI47_04305at 907.290 kb on + strand, within IAI47_04305at 907.290 kb on + strand, within IAI47_04305at 907.291 kb on - strand, within IAI47_04305at 907.291 kb on - strand, within IAI47_04305at 907.291 kb on - strand, within IAI47_04305at 907.291 kb on - strand, within IAI47_04305at 907.291 kb on - strand, within IAI47_04305at 907.291 kb on - strand, within IAI47_04305at 907.311 kb on - strandat 907.322 kb on + strandat 907.353 kb on + strandat 907.353 kb on + strandat 907.353 kb on + strandat 907.354 kb on - strandat 907.354 kb on - strandat 907.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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905,837 + IAI47_04300 0.18 -1.3
905,837 + IAI47_04300 0.18 -2.6
905,921 - IAI47_04300 0.26 -0.1
905,970 + IAI47_04300 0.31 -0.6
906,097 + IAI47_04300 0.42 +0.5
906,151 + IAI47_04300 0.48 +1.7
906,151 + IAI47_04300 0.48 -0.3
906,151 + IAI47_04300 0.48 -1.1
906,152 - IAI47_04300 0.48 +0.7
906,152 - IAI47_04300 0.48 -0.9
906,152 - IAI47_04300 0.48 +1.7
906,152 - IAI47_04300 0.48 -1.3
906,152 - IAI47_04300 0.48 -2.4
906,199 + IAI47_04300 0.52 -0.9
906,199 + IAI47_04300 0.52 -0.9
906,200 - IAI47_04300 0.52 -2.1
906,232 + IAI47_04300 0.55 -1.6
906,233 - IAI47_04300 0.55 +0.7
906,233 - IAI47_04300 0.55 -0.6
906,296 + IAI47_04300 0.61 -1.6
906,297 - IAI47_04300 0.61 -1.6
906,349 + IAI47_04300 0.66 -3.8
906,434 + IAI47_04300 0.74 -3.5
906,434 + IAI47_04300 0.74 -0.6
906,434 + IAI47_04300 0.74 +1.7
906,434 + IAI47_04300 0.74 -2.2
906,434 + IAI47_04300 0.74 -1.5
906,434 + IAI47_04300 0.74 -0.3
906,435 - IAI47_04300 0.74 -0.3
906,435 - IAI47_04300 0.74 +0.7
906,435 - IAI47_04300 0.74 +0.2
906,435 - IAI47_04300 0.74 -2.5
906,435 - IAI47_04300 0.74 -0.1
906,435 - IAI47_04300 0.74 -0.9
906,445 + IAI47_04300 0.75 +1.7
906,446 - IAI47_04300 0.75 -0.6
906,451 + IAI47_04300 0.76 -1.1
906,451 + IAI47_04300 0.76 -0.9
906,451 + IAI47_04300 0.76 +1.7
906,515 + IAI47_04300 0.82 -2.4
906,521 + IAI47_04300 0.82 +0.7
906,521 + IAI47_04300 0.82 -2.2
906,521 + IAI47_04300 0.82 -0.3
906,521 + IAI47_04300 0.82 -0.6
906,521 + IAI47_04300 0.82 -3.6
906,521 + IAI47_04300 0.82 -2.9
906,522 - IAI47_04300 0.82 +0.7
906,522 - IAI47_04300 0.82 +1.7
906,522 - IAI47_04300 0.82 -2.1
906,522 - IAI47_04300 0.82 -2.2
906,701 + +1.0
906,710 + -1.0
906,710 + -0.8
906,711 - +1.8
906,711 - +0.7
906,711 - +2.5
906,766 + -0.9
906,766 + -0.2
906,767 - +0.5
906,767 - -1.7
906,767 - +0.7
906,804 + +0.5
906,805 - +1.3
906,805 - -1.4
906,805 - +1.3
906,805 - +0.2
906,805 - -2.1
906,822 + +0.6
906,822 + -0.0
906,823 - -0.0
906,836 + -1.0
906,837 - +0.1
906,837 - -0.1
906,837 - -0.2
906,837 - +0.3
906,876 + +1.4
906,877 - -0.7
906,877 - -1.4
906,905 + IAI47_04305 0.13 +0.5
906,905 + IAI47_04305 0.13 -1.3
906,905 + IAI47_04305 0.13 -0.8
906,906 - IAI47_04305 0.13 -0.7
906,906 - IAI47_04305 0.13 -1.8
906,906 - IAI47_04305 0.13 -0.2
906,906 - IAI47_04305 0.13 -2.4
906,906 - IAI47_04305 0.13 +1.4
906,906 - IAI47_04305 0.13 +1.3
906,940 + IAI47_04305 0.20 +0.5
906,948 - IAI47_04305 0.21 -1.2
906,948 - IAI47_04305 0.21 +1.0
906,948 - IAI47_04305 0.21 -1.0
906,948 - IAI47_04305 0.21 -2.0
907,030 + IAI47_04305 0.37 -0.1
907,030 + IAI47_04305 0.37 -0.4
907,030 + IAI47_04305 0.37 -1.5
907,031 - IAI47_04305 0.37 +0.3
907,031 - IAI47_04305 0.37 +0.7
907,077 - IAI47_04305 0.46 +1.7
907,088 + IAI47_04305 0.48 -3.2
907,089 - IAI47_04305 0.49 -2.2
907,283 - IAI47_04305 0.86 -0.2
907,283 - IAI47_04305 0.86 +0.0
907,283 - IAI47_04305 0.86 -0.3
907,285 + IAI47_04305 0.86 -0.1
907,285 + IAI47_04305 0.86 -1.2
907,286 - IAI47_04305 0.87 -0.8
907,286 - IAI47_04305 0.87 -0.8
907,286 - IAI47_04305 0.87 +0.3
907,286 - IAI47_04305 0.87 -0.2
907,290 + IAI47_04305 0.87 +1.1
907,290 + IAI47_04305 0.87 -0.5
907,291 - IAI47_04305 0.87 +1.5
907,291 - IAI47_04305 0.87 -0.3
907,291 - IAI47_04305 0.87 +0.0
907,291 - IAI47_04305 0.87 -2.6
907,291 - IAI47_04305 0.87 +0.8
907,291 - IAI47_04305 0.87 +1.4
907,311 - +0.6
907,322 + +1.5
907,353 + -1.8
907,353 + +0.6
907,353 + -2.2
907,354 - -0.0
907,354 - -0.4
907,397 + -0.6

Or see this region's nucleotide sequence