Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03255 and IAI47_03260 are separated by 7 nucleotides IAI47_03260 and IAI47_03265 are separated by 25 nucleotides IAI47_03265 and IAI47_03270 are separated by 46 nucleotides
IAI47_03255: IAI47_03255 - fimbrial biogenesis outer membrane usher protein, at 674,729 to 677,176
_03255
IAI47_03260: IAI47_03260 - molecular chaperone, at 677,184 to 677,882
_03260
IAI47_03265: IAI47_03265 - spore coat protein U domain-containing protein, at 677,908 to 678,399
_03265
IAI47_03270: IAI47_03270 - spore coat protein U domain-containing protein, at 678,446 to 679,015
_03270
Position (kb) 677
678
679 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 676.915 kb on + strand, within IAI47_03255 at 676.952 kb on - strand at 677.015 kb on - strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.032 kb on + strand at 677.033 kb on - strand at 677.033 kb on - strand at 677.033 kb on - strand at 677.033 kb on - strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.034 kb on + strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.035 kb on - strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.088 kb on + strand at 677.089 kb on - strand at 677.089 kb on - strand at 677.089 kb on - strand at 677.089 kb on - strand at 677.185 kb on + strand at 677.185 kb on + strand at 677.185 kb on + strand at 677.185 kb on + strand at 677.185 kb on + strand at 677.186 kb on - strand at 677.269 kb on + strand, within IAI47_03260 at 677.269 kb on + strand, within IAI47_03260 at 677.269 kb on + strand, within IAI47_03260 at 677.269 kb on + strand, within IAI47_03260 at 677.269 kb on + strand, within IAI47_03260 at 677.270 kb on - strand, within IAI47_03260 at 677.270 kb on - strand, within IAI47_03260 at 677.270 kb on - strand, within IAI47_03260 at 677.270 kb on - strand, within IAI47_03260 at 677.270 kb on - strand, within IAI47_03260 at 677.270 kb on - strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.290 kb on + strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.291 kb on - strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.296 kb on + strand, within IAI47_03260 at 677.297 kb on - strand, within IAI47_03260 at 677.297 kb on - strand, within IAI47_03260 at 677.297 kb on - strand, within IAI47_03260 at 677.297 kb on - strand, within IAI47_03260 at 677.298 kb on + strand, within IAI47_03260 at 677.298 kb on + strand, within IAI47_03260 at 677.298 kb on + strand, within IAI47_03260 at 677.298 kb on + strand, within IAI47_03260 at 677.298 kb on + strand, within IAI47_03260 at 677.299 kb on - strand, within IAI47_03260 at 677.299 kb on - strand, within IAI47_03260 at 677.299 kb on - strand, within IAI47_03260 at 677.328 kb on - strand, within IAI47_03260 at 677.455 kb on + strand, within IAI47_03260 at 677.455 kb on + strand, within IAI47_03260 at 677.456 kb on - strand, within IAI47_03260 at 677.477 kb on - strand, within IAI47_03260 at 677.672 kb on - strand, within IAI47_03260 at 677.672 kb on - strand, within IAI47_03260 at 677.672 kb on - strand, within IAI47_03260 at 677.780 kb on + strand, within IAI47_03260 at 677.780 kb on + strand, within IAI47_03260 at 677.781 kb on - strand, within IAI47_03260 at 677.781 kb on - strand, within IAI47_03260 at 677.796 kb on - strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.802 kb on + strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.803 kb on - strand, within IAI47_03260 at 677.817 kb on - strand at 677.838 kb on + strand at 677.839 kb on - strand at 677.850 kb on + strand at 677.850 kb on + strand at 677.850 kb on + strand at 677.850 kb on + strand at 677.851 kb on - strand at 677.851 kb on - strand at 677.851 kb on - strand at 677.888 kb on + strand at 677.888 kb on + strand at 677.888 kb on + strand at 677.889 kb on - strand at 677.889 kb on - strand at 677.889 kb on - strand at 677.899 kb on + strand at 677.899 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.901 kb on + strand at 677.902 kb on - strand at 677.902 kb on - strand at 677.934 kb on + strand at 677.940 kb on + strand at 677.941 kb on - strand at 677.941 kb on - strand at 677.943 kb on - strand at 677.943 kb on - strand at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.984 kb on + strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.985 kb on - strand, within IAI47_03265 at 677.997 kb on + strand, within IAI47_03265 at 677.997 kb on + strand, within IAI47_03265 at 677.998 kb on - strand, within IAI47_03265 at 677.998 kb on - strand, within IAI47_03265 at 677.998 kb on - strand, within IAI47_03265 at 678.003 kb on + strand, within IAI47_03265 at 678.003 kb on + strand, within IAI47_03265 at 678.004 kb on - strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.015 kb on + strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.016 kb on - strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.017 kb on + strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.018 kb on - strand, within IAI47_03265 at 678.069 kb on + strand, within IAI47_03265 at 678.070 kb on - strand, within IAI47_03265 at 678.070 kb on - strand, within IAI47_03265 at 678.070 kb on - strand, within IAI47_03265 at 678.072 kb on + strand, within IAI47_03265 at 678.072 kb on + strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.073 kb on - strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.081 kb on + strand, within IAI47_03265 at 678.082 kb on - strand, within IAI47_03265 at 678.082 kb on - strand, within IAI47_03265 at 678.083 kb on + strand, within IAI47_03265 at 678.083 kb on + strand, within IAI47_03265 at 678.084 kb on - strand, within IAI47_03265 at 678.084 kb on - strand, within IAI47_03265 at 678.094 kb on - strand, within IAI47_03265 at 678.151 kb on - strand, within IAI47_03265 at 678.151 kb on - strand, within IAI47_03265 at 678.151 kb on - strand, within IAI47_03265 at 678.193 kb on + strand, within IAI47_03265 at 678.193 kb on + strand, within IAI47_03265 at 678.194 kb on - strand, within IAI47_03265 at 678.201 kb on + strand, within IAI47_03265 at 678.202 kb on - strand, within IAI47_03265 at 678.261 kb on + strand, within IAI47_03265 at 678.261 kb on + strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.262 kb on - strand, within IAI47_03265 at 678.295 kb on + strand, within IAI47_03265 at 678.296 kb on - strand, within IAI47_03265 at 678.296 kb on - strand, within IAI47_03265 at 678.298 kb on + strand, within IAI47_03265 at 678.298 kb on + strand, within IAI47_03265 at 678.298 kb on + strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.299 kb on - strand, within IAI47_03265 at 678.370 kb on + strand at 678.370 kb on + strand at 678.370 kb on + strand at 678.370 kb on + strand at 678.371 kb on - strand at 678.371 kb on - strand at 678.371 kb on - strand at 678.371 kb on - strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.427 kb on + strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.428 kb on - strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.431 kb on + strand at 678.432 kb on - strand at 678.447 kb on + strand at 678.448 kb on - strand at 678.448 kb on - strand at 678.448 kb on - strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.450 kb on + strand at 678.451 kb on - strand at 678.451 kb on - strand at 678.451 kb on - strand at 678.451 kb on - strand at 678.467 kb on - strand at 678.467 kb on - strand at 678.472 kb on + strand at 678.479 kb on - strand at 678.480 kb on + strand at 678.480 kb on + strand at 678.480 kb on + strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.481 kb on - strand at 678.506 kb on - strand, within IAI47_03270 at 678.531 kb on + strand, within IAI47_03270 at 678.532 kb on - strand, within IAI47_03270 at 678.532 kb on - strand, within IAI47_03270 at 678.540 kb on + strand, within IAI47_03270 at 678.540 kb on + strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.541 kb on - strand, within IAI47_03270 at 678.589 kb on + strand, within IAI47_03270 at 678.589 kb on + strand, within IAI47_03270 at 678.590 kb on - strand, within IAI47_03270 at 678.590 kb on - strand, within IAI47_03270 at 678.590 kb on - strand, within IAI47_03270 at 678.610 kb on + strand, within IAI47_03270 at 678.611 kb on - strand, within IAI47_03270 at 678.627 kb on + strand, within IAI47_03270 at 678.628 kb on - strand, within IAI47_03270 at 678.635 kb on - strand, within IAI47_03270 at 678.635 kb on - strand, within IAI47_03270 at 678.635 kb on - strand, within IAI47_03270 at 678.636 kb on + strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.637 kb on - strand, within IAI47_03270 at 678.655 kb on + strand, within IAI47_03270 at 678.656 kb on - strand, within IAI47_03270 at 678.676 kb on - strand, within IAI47_03270 at 678.676 kb on - strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.702 kb on + strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.703 kb on - strand, within IAI47_03270 at 678.721 kb on + strand, within IAI47_03270 at 678.721 kb on + strand, within IAI47_03270 at 678.721 kb on + strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.722 kb on - strand, within IAI47_03270 at 678.745 kb on + strand, within IAI47_03270 at 678.745 kb on + strand, within IAI47_03270 at 678.745 kb on + strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.746 kb on - strand, within IAI47_03270 at 678.747 kb on + strand, within IAI47_03270 at 678.748 kb on - strand, within IAI47_03270 at 678.748 kb on - strand, within IAI47_03270 at 678.748 kb on - strand, within IAI47_03270 at 678.778 kb on + strand, within IAI47_03270 at 678.779 kb on - strand, within IAI47_03270 at 678.779 kb on - strand, within IAI47_03270 at 678.874 kb on + strand, within IAI47_03270 at 678.874 kb on + strand, within IAI47_03270 at 678.875 kb on - strand, within IAI47_03270 at 678.890 kb on + strand, within IAI47_03270 at 678.890 kb on + strand, within IAI47_03270 at 678.977 kb on + strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 678.978 kb on - strand at 679.015 kb on + strand at 679.016 kb on - strand at 679.065 kb on + strand at 679.065 kb on + strand at 679.066 kb on - strand at 679.066 kb on - strand at 679.066 kb on - strand at 679.138 kb on + strand at 679.139 kb on - strand at 679.144 kb on + strand at 679.144 kb on + strand at 679.158 kb on + strand at 679.158 kb on + strand at 679.158 kb on + strand at 679.159 kb on - strand at 679.159 kb on - strand at 679.159 kb on - strand at 679.163 kb on + strand at 679.170 kb on - strand at 679.174 kb on - strand at 679.178 kb on + strand at 679.187 kb on + strand at 679.237 kb on + strand at 679.237 kb on + strand at 679.237 kb on + strand at 679.238 kb on - strand at 679.257 kb on - strand at 679.269 kb on + strand at 679.270 kb on - strand at 679.336 kb on + strand at 679.336 kb on + strand at 679.336 kb on + strand at 679.336 kb on + strand at 679.337 kb on - strand at 679.337 kb on - strand at 679.337 kb on - strand at 679.347 kb on - strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.359 kb on + strand at 679.360 kb on - strand at 679.360 kb on - strand at 679.360 kb on - strand at 679.362 kb on + strand at 679.396 kb on + strand at 679.396 kb on + strand at 679.397 kb on - strand at 679.397 kb on - strand at 679.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 676,915 + IAI47_03255 0.89 +0.9 676,952 - +1.1 677,015 - +2.0 677,032 + +1.1 677,032 + -0.1 677,032 + -0.3 677,032 + -1.1 677,032 + -1.3 677,032 + +0.5 677,032 + -0.0 677,032 + -1.2 677,032 + -2.6 677,032 + -0.9 677,033 - +1.1 677,033 - +1.1 677,033 - +0.4 677,033 - -2.5 677,034 + +0.3 677,034 + -0.0 677,034 + +0.7 677,034 + +0.7 677,034 + -0.8 677,034 + +0.3 677,034 + +0.4 677,034 + +1.7 677,034 + +0.2 677,034 + -0.3 677,034 + +0.8 677,034 + -0.5 677,034 + -0.1 677,034 + +2.7 677,034 + +1.3 677,034 + -1.5 677,034 + +0.9 677,035 - +1.2 677,035 - +0.7 677,035 - -0.3 677,035 - -2.5 677,035 - -0.2 677,035 - -2.1 677,035 - -2.1 677,035 - -1.5 677,035 - +1.0 677,035 - +0.3 677,035 - +0.0 677,035 - +1.4 677,035 - +0.9 677,035 - -0.4 677,035 - -1.1 677,088 + -1.8 677,088 + -0.8 677,088 + -1.4 677,088 + -0.9 677,088 + -1.6 677,088 + -1.5 677,088 + -0.1 677,088 + +0.5 677,088 + -1.1 677,088 + +1.4 677,088 + +0.5 677,088 + -0.6 677,088 + -0.9 677,088 + -0.9 677,088 + +1.9 677,088 + -2.2 677,088 + +1.3 677,089 - -0.7 677,089 - +0.6 677,089 - +0.2 677,089 - -1.0 677,185 + -0.3 677,185 + +0.5 677,185 + +1.2 677,185 + -1.7 677,185 + -0.7 677,186 - -1.0 677,269 + IAI47_03260 0.12 -0.0 677,269 + IAI47_03260 0.12 +0.2 677,269 + IAI47_03260 0.12 -3.3 677,269 + IAI47_03260 0.12 -0.8 677,269 + IAI47_03260 0.12 -1.2 677,270 - IAI47_03260 0.12 -3.7 677,270 - IAI47_03260 0.12 +0.5 677,270 - IAI47_03260 0.12 +1.1 677,270 - IAI47_03260 0.12 -1.9 677,270 - IAI47_03260 0.12 -1.2 677,270 - IAI47_03260 0.12 +0.3 677,290 + IAI47_03260 0.15 -0.8 677,290 + IAI47_03260 0.15 -0.5 677,290 + IAI47_03260 0.15 -1.6 677,290 + IAI47_03260 0.15 -0.2 677,290 + IAI47_03260 0.15 -2.0 677,290 + IAI47_03260 0.15 -0.1 677,290 + IAI47_03260 0.15 -0.3 677,290 + IAI47_03260 0.15 +0.4 677,291 - IAI47_03260 0.15 -0.6 677,291 - IAI47_03260 0.15 -2.3 677,291 - IAI47_03260 0.15 +1.5 677,291 - IAI47_03260 0.15 -0.7 677,291 - IAI47_03260 0.15 +0.5 677,291 - IAI47_03260 0.15 -0.1 677,291 - IAI47_03260 0.15 +1.3 677,291 - IAI47_03260 0.15 +1.7 677,291 - 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Or see this region's nucleotide sequence