Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1868

Experiment: Cobalt chloride 0.005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1866 and BT1867 are separated by 175 nucleotidesBT1867 and BT1868 are separated by 288 nucleotidesBT1868 and BT1869 are separated by 376 nucleotidesBT1869 and BT1870 are separated by 173 nucleotides BT1866: BT1866 - hypothetical protein (NCBI ptt file), at 2,344,525 to 2,344,737 BT1866 BT1867: BT1867 - hypothetical protein (NCBI ptt file), at 2,344,913 to 2,345,278 BT1867 BT1868: BT1868 - conserved hypothetical protein (NCBI ptt file), at 2,345,567 to 2,347,219 BT1868 BT1869: BT1869 - conserved hypothetical protein (NCBI ptt file), at 2,347,596 to 2,347,979 BT1869 BT1870: BT1870 - integrase (NCBI ptt file), at 2,348,153 to 2,348,872 BT1870 Position (kb) 2345 2346 2347 2348Strain fitness (log2 ratio) -2 -1 0 1 2at 2344.880 kb on + strandat 2344.903 kb on - strandat 2344.903 kb on - strandat 2344.904 kb on + strandat 2344.904 kb on + strandat 2344.940 kb on - strandat 2344.959 kb on + strand, within BT1867at 2344.959 kb on + strand, within BT1867at 2344.959 kb on + strand, within BT1867at 2344.960 kb on - strand, within BT1867at 2344.991 kb on + strand, within BT1867at 2345.002 kb on + strand, within BT1867at 2345.005 kb on - strand, within BT1867at 2345.028 kb on - strand, within BT1867at 2346.529 kb on - strand, within BT1868at 2346.548 kb on - strand, within BT1868at 2346.563 kb on - strand, within BT1868

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.005 mM
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2,344,880 + -0.3
2,344,903 - -0.4
2,344,903 - -0.6
2,344,904 + -1.0
2,344,904 + -1.1
2,344,940 - -1.6
2,344,959 + BT1867 0.13 -0.7
2,344,959 + BT1867 0.13 -0.7
2,344,959 + BT1867 0.13 -1.4
2,344,960 - BT1867 0.13 +0.6
2,344,991 + BT1867 0.21 -2.7
2,345,002 + BT1867 0.24 +2.0
2,345,005 - BT1867 0.25 -0.6
2,345,028 - BT1867 0.31 +0.6
2,346,529 - BT1868 0.58 -1.7
2,346,548 - BT1868 0.59 -1.7
2,346,563 - BT1868 0.60 -1.7

Or see this region's nucleotide sequence