Experiment: Cobalt chloride 0.005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1866 and BT1867 are separated by 175 nucleotides BT1867 and BT1868 are separated by 288 nucleotides BT1868 and BT1869 are separated by 376 nucleotides BT1869 and BT1870 are separated by 173 nucleotides
BT1866: BT1866 - hypothetical protein (NCBI ptt file), at 2,344,525 to 2,344,737
BT1866
BT1867: BT1867 - hypothetical protein (NCBI ptt file), at 2,344,913 to 2,345,278
BT1867
BT1868: BT1868 - conserved hypothetical protein (NCBI ptt file), at 2,345,567 to 2,347,219
BT1868
BT1869: BT1869 - conserved hypothetical protein (NCBI ptt file), at 2,347,596 to 2,347,979
BT1869
BT1870: BT1870 - integrase (NCBI ptt file), at 2,348,153 to 2,348,872
BT1870
Position (kb)
2345
2346
2347
2348 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2344.880 kb on + strand at 2344.903 kb on - strand at 2344.903 kb on - strand at 2344.904 kb on + strand at 2344.904 kb on + strand at 2344.940 kb on - strand at 2344.959 kb on + strand, within BT1867 at 2344.959 kb on + strand, within BT1867 at 2344.959 kb on + strand, within BT1867 at 2344.960 kb on - strand, within BT1867 at 2344.991 kb on + strand, within BT1867 at 2345.002 kb on + strand, within BT1867 at 2345.005 kb on - strand, within BT1867 at 2345.028 kb on - strand, within BT1867 at 2346.529 kb on - strand, within BT1868 at 2346.548 kb on - strand, within BT1868 at 2346.563 kb on - strand, within BT1868
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.005 mM remove 2,344,880 + -0.3 2,344,903 - -0.4 2,344,903 - -0.6 2,344,904 + -1.0 2,344,904 + -1.1 2,344,940 - -1.6 2,344,959 + BT1867 0.13 -0.7 2,344,959 + BT1867 0.13 -0.7 2,344,959 + BT1867 0.13 -1.4 2,344,960 - BT1867 0.13 +0.6 2,344,991 + BT1867 0.21 -2.7 2,345,002 + BT1867 0.24 +2.0 2,345,005 - BT1867 0.25 -0.6 2,345,028 - BT1867 0.31 +0.6 2,346,529 - BT1868 0.58 -1.7 2,346,548 - BT1868 0.59 -1.7 2,346,563 - BT1868 0.60 -1.7
Or see this region's nucleotide sequence