Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3697

Experiment: chromate 0.000005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3695 and Pf6N2E2_3696 are separated by 159 nucleotidesPf6N2E2_3696 and Pf6N2E2_3697 are separated by 133 nucleotidesPf6N2E2_3697 and Pf6N2E2_3698 are separated by 246 nucleotidesPf6N2E2_3698 and Pf6N2E2_3699 are separated by 113 nucleotides Pf6N2E2_3695 - Helix-turn-helix motif, at 4,311,737 to 4,312,138 _3695 Pf6N2E2_3696 - hypothetical protein, at 4,312,298 to 4,312,576 _3696 Pf6N2E2_3697 - Transcriptional regulator, LysR family, at 4,312,710 to 4,313,576 _3697 Pf6N2E2_3698 - Nicotinamidase family protein YcaC, at 4,313,823 to 4,314,449 _3698 Pf6N2E2_3699 - Thioredoxin, at 4,314,563 to 4,314,985 _3699 Position (kb) 4312 4313 4314Strain fitness (log2 ratio) -2 -1 0 1 2at 4311.726 kb on - strandat 4311.821 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.057 kb on - strand, within Pf6N2E2_3695at 4312.169 kb on + strandat 4312.170 kb on - strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.176 kb on - strandat 4312.176 kb on - strandat 4312.176 kb on - strandat 4312.204 kb on + strandat 4312.238 kb on + strandat 4312.239 kb on - strandat 4312.259 kb on - strandat 4312.309 kb on + strandat 4312.310 kb on - strandat 4312.464 kb on + strand, within Pf6N2E2_3696at 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.601 kb on - strandat 4312.601 kb on - strandat 4312.601 kb on - strandat 4312.601 kb on - strandat 4312.761 kb on - strandat 4313.015 kb on - strand, within Pf6N2E2_3697at 4313.015 kb on - strand, within Pf6N2E2_3697at 4313.085 kb on + strand, within Pf6N2E2_3697at 4313.099 kb on - strand, within Pf6N2E2_3697at 4313.129 kb on + strand, within Pf6N2E2_3697at 4313.129 kb on + strand, within Pf6N2E2_3697at 4313.129 kb on + strand, within Pf6N2E2_3697at 4313.130 kb on - strand, within Pf6N2E2_3697at 4313.130 kb on - strand, within Pf6N2E2_3697at 4313.303 kb on + strand, within Pf6N2E2_3697at 4313.303 kb on + strand, within Pf6N2E2_3697at 4313.303 kb on + strand, within Pf6N2E2_3697at 4313.304 kb on - strand, within Pf6N2E2_3697at 4313.304 kb on - strand, within Pf6N2E2_3697at 4313.419 kb on + strand, within Pf6N2E2_3697at 4313.422 kb on + strand, within Pf6N2E2_3697at 4313.423 kb on - strand, within Pf6N2E2_3697at 4313.423 kb on - strand, within Pf6N2E2_3697at 4313.590 kb on + strandat 4313.590 kb on + strandat 4313.591 kb on - strandat 4313.591 kb on - strandat 4313.593 kb on + strandat 4313.594 kb on - strandat 4313.594 kb on - strandat 4313.594 kb on - strandat 4313.807 kb on + strandat 4313.808 kb on - strandat 4313.808 kb on - strandat 4313.817 kb on + strandat 4313.817 kb on + strandat 4313.835 kb on + strandat 4313.835 kb on + strandat 4313.835 kb on + strandat 4313.836 kb on - strandat 4313.856 kb on - strandat 4313.856 kb on - strandat 4313.856 kb on - strandat 4313.968 kb on - strand, within Pf6N2E2_3698at 4313.968 kb on - strand, within Pf6N2E2_3698at 4314.063 kb on + strand, within Pf6N2E2_3698at 4314.063 kb on + strand, within Pf6N2E2_3698at 4314.063 kb on + strand, within Pf6N2E2_3698at 4314.064 kb on - strand, within Pf6N2E2_3698at 4314.423 kb on + strandat 4314.424 kb on - strandat 4314.517 kb on + strandat 4314.517 kb on + strandat 4314.517 kb on + strandat 4314.517 kb on + strandat 4314.517 kb on + strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.518 kb on - strandat 4314.519 kb on + strandat 4314.519 kb on + strandat 4314.520 kb on - strandat 4314.520 kb on - strandat 4314.520 kb on - strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.521 kb on + strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strandat 4314.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction chromate 0.000005 M
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4,311,726 - -0.2
4,311,821 + Pf6N2E2_3695 0.21 +2.1
4,312,056 + Pf6N2E2_3695 0.79 -0.6
4,312,056 + Pf6N2E2_3695 0.79 +0.3
4,312,056 + Pf6N2E2_3695 0.79 -1.4
4,312,056 + Pf6N2E2_3695 0.79 +1.3
4,312,057 - Pf6N2E2_3695 0.80 -0.5
4,312,169 + -0.4
4,312,170 - +0.6
4,312,175 + +0.6
4,312,175 + +0.5
4,312,175 + +0.6
4,312,175 + +0.2
4,312,175 + -0.8
4,312,175 + -1.1
4,312,175 + -0.8
4,312,175 + +0.5
4,312,175 + -0.2
4,312,176 - +0.6
4,312,176 - +0.3
4,312,176 - -0.5
4,312,204 + -0.0
4,312,238 + -0.0
4,312,239 - -0.6
4,312,259 - -0.2
4,312,309 + -0.7
4,312,310 - -0.5
4,312,464 + Pf6N2E2_3696 0.59 +0.4
4,312,600 + -0.6
4,312,600 + +0.2
4,312,600 + +0.0
4,312,600 + +0.6
4,312,600 + +0.5
4,312,601 - +0.5
4,312,601 - -0.1
4,312,601 - -0.2
4,312,601 - +0.6
4,312,761 - -0.5
4,313,015 - Pf6N2E2_3697 0.35 +0.6
4,313,015 - Pf6N2E2_3697 0.35 +0.6
4,313,085 + Pf6N2E2_3697 0.43 +0.2
4,313,099 - Pf6N2E2_3697 0.45 -0.4
4,313,129 + Pf6N2E2_3697 0.48 -0.1
4,313,129 + Pf6N2E2_3697 0.48 +0.7
4,313,129 + Pf6N2E2_3697 0.48 +1.0
4,313,130 - Pf6N2E2_3697 0.48 -0.2
4,313,130 - Pf6N2E2_3697 0.48 -0.7
4,313,303 + Pf6N2E2_3697 0.68 -0.8
4,313,303 + Pf6N2E2_3697 0.68 -0.3
4,313,303 + Pf6N2E2_3697 0.68 +0.2
4,313,304 - Pf6N2E2_3697 0.69 +0.9
4,313,304 - Pf6N2E2_3697 0.69 -1.8
4,313,419 + Pf6N2E2_3697 0.82 -0.3
4,313,422 + Pf6N2E2_3697 0.82 +0.0
4,313,423 - Pf6N2E2_3697 0.82 +1.4
4,313,423 - Pf6N2E2_3697 0.82 -0.2
4,313,590 + -1.1
4,313,590 + +0.1
4,313,591 - -0.1
4,313,591 - +1.7
4,313,593 + +2.1
4,313,594 - -0.5
4,313,594 - -0.3
4,313,594 - -0.7
4,313,807 + +0.5
4,313,808 - +1.1
4,313,808 - +0.4
4,313,817 + +0.5
4,313,817 + -1.1
4,313,835 + -0.2
4,313,835 + -0.0
4,313,835 + +1.3
4,313,836 - -0.2
4,313,856 - -0.6
4,313,856 - -2.0
4,313,856 - -1.1
4,313,968 - Pf6N2E2_3698 0.23 -0.6
4,313,968 - Pf6N2E2_3698 0.23 -0.7
4,314,063 + Pf6N2E2_3698 0.38 -1.2
4,314,063 + Pf6N2E2_3698 0.38 -0.5
4,314,063 + Pf6N2E2_3698 0.38 -0.3
4,314,064 - Pf6N2E2_3698 0.38 +1.4
4,314,423 + +0.5
4,314,424 - -0.2
4,314,517 + -0.1
4,314,517 + +0.3
4,314,517 + +0.8
4,314,517 + +1.2
4,314,517 + +0.6
4,314,518 - -0.1
4,314,518 - +0.8
4,314,518 - +1.1
4,314,518 - -1.0
4,314,518 - -1.3
4,314,518 - +0.6
4,314,518 - +0.7
4,314,518 - +0.0
4,314,519 + -1.7
4,314,519 + +0.7
4,314,520 - +0.9
4,314,520 - +0.4
4,314,520 - +0.2
4,314,521 + -0.2
4,314,521 + -1.7
4,314,521 + -0.2
4,314,521 + +0.8
4,314,521 + -1.7
4,314,521 + -1.1
4,314,521 + +0.0
4,314,521 + +0.6
4,314,521 + +0.5
4,314,521 + +0.7
4,314,521 + +0.2
4,314,521 + -0.1
4,314,521 + -0.7
4,314,522 - +0.3
4,314,522 - +0.0
4,314,522 - +0.1
4,314,522 - -0.7
4,314,522 - -0.1
4,314,522 - +0.2
4,314,522 - +0.1
4,314,522 - +1.1
4,314,522 - +0.6
4,314,522 - +0.5
4,314,522 - +0.5
4,314,522 - -0.4

Or see this region's nucleotide sequence