Experiment: chromate 0.000005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1303 and Pf6N2E2_1304 are separated by 489 nucleotides Pf6N2E2_1304 and Pf6N2E2_1305 are separated by 171 nucleotides Pf6N2E2_1305 and Pf6N2E2_1306 are separated by 83 nucleotides
Pf6N2E2_1303 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 1,538,424 to 1,538,984
_1303
Pf6N2E2_1304 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 1,539,474 to 1,539,722
_1304
Pf6N2E2_1305 - Homoprotocatechuate degradative operon repressor, at 1,539,894 to 1,540,295
_1305
Pf6N2E2_1306 - Transcriptional activator of 4-hydroxyphenylacetate 3-monooxygenase operon, XylS/AraC family, at 1,540,379 to 1,541,284
_1306
Position (kb)
1539
1540
1541 Strain fitness (log2 ratio)
-2
-1
0
1 at 1538.931 kb on + strand at 1538.932 kb on - strand at 1538.932 kb on - strand at 1539.023 kb on - strand at 1539.061 kb on - strand at 1539.150 kb on - strand at 1539.155 kb on + strand at 1539.156 kb on - strand at 1539.158 kb on + strand at 1539.159 kb on - strand at 1539.318 kb on - strand at 1539.327 kb on + strand at 1539.327 kb on + strand at 1539.389 kb on + strand at 1539.389 kb on + strand at 1539.980 kb on - strand, within Pf6N2E2_1305 at 1540.113 kb on + strand, within Pf6N2E2_1305 at 1540.114 kb on - strand, within Pf6N2E2_1305 at 1540.114 kb on - strand, within Pf6N2E2_1305 at 1540.350 kb on + strand at 1540.350 kb on + strand at 1540.350 kb on + strand at 1540.350 kb on + strand at 1540.351 kb on - strand at 1540.360 kb on - strand at 1540.662 kb on + strand, within Pf6N2E2_1306 at 1540.748 kb on + strand, within Pf6N2E2_1306 at 1540.748 kb on + strand, within Pf6N2E2_1306 at 1540.749 kb on - strand, within Pf6N2E2_1306 at 1540.851 kb on + strand, within Pf6N2E2_1306 at 1541.079 kb on + strand, within Pf6N2E2_1306 at 1541.080 kb on - strand, within Pf6N2E2_1306 at 1541.080 kb on - strand, within Pf6N2E2_1306 at 1541.099 kb on + strand, within Pf6N2E2_1306 at 1541.100 kb on - strand, within Pf6N2E2_1306 at 1541.100 kb on - strand, within Pf6N2E2_1306 at 1541.124 kb on + strand, within Pf6N2E2_1306 at 1541.206 kb on - strand at 1541.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction chromate 0.000005 M remove 1,538,931 + +0.4 1,538,932 - -1.1 1,538,932 - +0.1 1,539,023 - +0.1 1,539,061 - -0.3 1,539,150 - +0.4 1,539,155 + -0.1 1,539,156 - -1.6 1,539,158 + +0.1 1,539,159 - -0.9 1,539,318 - -2.1 1,539,327 + -0.2 1,539,327 + +0.0 1,539,389 + -0.2 1,539,389 + +0.5 1,539,980 - Pf6N2E2_1305 0.21 -0.7 1,540,113 + Pf6N2E2_1305 0.54 +0.5 1,540,114 - Pf6N2E2_1305 0.55 +1.3 1,540,114 - Pf6N2E2_1305 0.55 +1.1 1,540,350 + +1.1 1,540,350 + +0.1 1,540,350 + +0.2 1,540,350 + +0.4 1,540,351 - +1.1 1,540,360 - -1.5 1,540,662 + Pf6N2E2_1306 0.31 -0.7 1,540,748 + Pf6N2E2_1306 0.41 -0.7 1,540,748 + Pf6N2E2_1306 0.41 -0.9 1,540,749 - Pf6N2E2_1306 0.41 -0.6 1,540,851 + Pf6N2E2_1306 0.52 -1.3 1,541,079 + Pf6N2E2_1306 0.77 +1.1 1,541,080 - Pf6N2E2_1306 0.77 +0.7 1,541,080 - Pf6N2E2_1306 0.77 +0.2 1,541,099 + Pf6N2E2_1306 0.79 -1.3 1,541,100 - Pf6N2E2_1306 0.80 +0.0 1,541,100 - Pf6N2E2_1306 0.80 -1.6 1,541,124 + Pf6N2E2_1306 0.82 +0.5 1,541,206 - +0.3 1,541,206 - -0.1
Or see this region's nucleotide sequence