Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4589

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4588 and Pf1N1B4_4589 are separated by 155 nucleotidesPf1N1B4_4589 and Pf1N1B4_4590 are separated by 183 nucleotides Pf1N1B4_4588 - Transcriptional regulator, at 5,058,446 to 5,059,312 _4588 Pf1N1B4_4589 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 5,059,468 to 5,060,265 _4589 Pf1N1B4_4590 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 5,060,449 to 5,061,900 _4590 Position (kb) 5059 5060 5061Strain fitness (log2 ratio) -2 -1 0 1 2at 5060.338 kb on - strandat 5060.500 kb on - strandat 5060.500 kb on - strandat 5060.584 kb on - strandat 5060.669 kb on - strand, within Pf1N1B4_4590at 5060.669 kb on - strandat 5061.007 kb on - strand, within Pf1N1B4_4590at 5061.239 kb on - strand, within Pf1N1B4_4590at 5061.239 kb on - strand, within Pf1N1B4_4590

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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5,060,338 - -0.9
5,060,500 - +1.4
5,060,500 - +0.2
5,060,584 - +0.8
5,060,669 - Pf1N1B4_4590 0.15 +0.1
5,060,669 - +0.7
5,061,007 - Pf1N1B4_4590 0.38 -1.8
5,061,239 - Pf1N1B4_4590 0.54 +2.0
5,061,239 - Pf1N1B4_4590 0.54 -0.4

Or see this region's nucleotide sequence