Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08740 and MMP_RS08745 are separated by 697 nucleotides MMP_RS08745 and MMP_RS08750 are separated by 329 nucleotides MMP_RS08750 and MMP_RS08755 are separated by 0 nucleotides
MMP_RS08740: MMP_RS08740 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 1,636,988 to 1,638,964
_RS08740
MMP_RS08745: MMP_RS08745 - CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase, at 1,639,662 to 1,640,198
_RS08745
MMP_RS08750: MMP_RS08750 - hypothetical protein, at 1,640,528 to 1,640,719
_RS08750
MMP_RS08755: MMP_RS08755 - sodium:solute symporter family protein, at 1,640,720 to 1,642,321
_RS08755
Position (kb)
1639
1640
1641 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1639.009 kb on - strand at 1639.010 kb on + strand at 1639.011 kb on - strand at 1639.011 kb on - strand at 1639.039 kb on + strand at 1639.206 kb on + strand at 1639.217 kb on + strand at 1639.245 kb on + strand at 1639.275 kb on - strand at 1639.276 kb on + strand at 1639.277 kb on - strand at 1639.278 kb on + strand at 1639.278 kb on + strand at 1639.279 kb on - strand at 1639.280 kb on + strand at 1639.280 kb on + strand at 1639.298 kb on - strand at 1639.339 kb on - strand at 1639.373 kb on + strand at 1639.421 kb on + strand at 1639.439 kb on + strand at 1639.439 kb on + strand at 1639.451 kb on - strand at 1639.452 kb on + strand at 1639.516 kb on - strand at 1639.521 kb on - strand at 1639.522 kb on + strand at 1639.522 kb on + strand at 1639.525 kb on - strand at 1639.526 kb on + strand at 1639.593 kb on + strand at 1639.605 kb on - strand at 1639.605 kb on - strand at 1639.625 kb on - strand at 1639.625 kb on - strand at 1639.626 kb on + strand at 1639.626 kb on + strand at 1639.630 kb on - strand at 1639.631 kb on + strand at 1639.631 kb on + strand at 1639.681 kb on - strand at 1639.699 kb on + strand at 1639.713 kb on - strand at 1639.714 kb on + strand at 1639.717 kb on - strand, within MMP_RS08745 at 1639.736 kb on - strand, within MMP_RS08745 at 1639.810 kb on - strand, within MMP_RS08745 at 1639.874 kb on - strand, within MMP_RS08745 at 1639.880 kb on - strand, within MMP_RS08745 at 1639.881 kb on + strand, within MMP_RS08745 at 1639.882 kb on - strand, within MMP_RS08745 at 1639.883 kb on + strand, within MMP_RS08745 at 1639.883 kb on + strand, within MMP_RS08745 at 1639.883 kb on + strand, within MMP_RS08745 at 1639.885 kb on - strand, within MMP_RS08745 at 1639.886 kb on + strand, within MMP_RS08745 at 1639.886 kb on + strand, within MMP_RS08745 at 1639.887 kb on - strand, within MMP_RS08745 at 1639.889 kb on - strand, within MMP_RS08745 at 1639.889 kb on - strand, within MMP_RS08745 at 1639.931 kb on - strand, within MMP_RS08745 at 1640.109 kb on + strand, within MMP_RS08745 at 1640.109 kb on + strand, within MMP_RS08745 at 1640.120 kb on + strand, within MMP_RS08745 at 1640.196 kb on - strand at 1640.244 kb on + strand at 1640.244 kb on + strand at 1640.245 kb on - strand at 1640.245 kb on - strand at 1640.249 kb on - strand at 1640.250 kb on + strand at 1640.250 kb on + strand at 1640.250 kb on + strand at 1640.250 kb on + strand at 1640.252 kb on - strand at 1640.262 kb on - strand at 1640.412 kb on + strand at 1640.450 kb on - strand at 1640.450 kb on - strand at 1640.451 kb on + strand at 1640.451 kb on + strand at 1640.451 kb on + strand at 1640.455 kb on - strand at 1640.466 kb on - strand at 1640.479 kb on + strand at 1640.479 kb on + strand at 1640.601 kb on - strand, within MMP_RS08750 at 1640.601 kb on - strand, within MMP_RS08750 at 1640.602 kb on + strand, within MMP_RS08750 at 1640.736 kb on - strand at 1640.752 kb on + strand at 1640.755 kb on + strand at 1640.756 kb on - strand at 1640.756 kb on - strand at 1640.757 kb on + strand at 1640.763 kb on - strand at 1640.925 kb on - strand, within MMP_RS08755 at 1640.975 kb on + strand, within MMP_RS08755 at 1640.981 kb on + strand, within MMP_RS08755 at 1640.982 kb on - strand, within MMP_RS08755 at 1641.010 kb on - strand, within MMP_RS08755 at 1641.082 kb on - strand, within MMP_RS08755 at 1641.084 kb on - strand, within MMP_RS08755 at 1641.106 kb on + strand, within MMP_RS08755 at 1641.166 kb on + strand, within MMP_RS08755
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,639,009 - -1.0 1,639,010 + -1.5 1,639,011 - -1.9 1,639,011 - -4.5 1,639,039 + -0.4 1,639,206 + -0.0 1,639,217 + +0.3 1,639,245 + -0.2 1,639,275 - -0.2 1,639,276 + -0.2 1,639,277 - -0.8 1,639,278 + -0.8 1,639,278 + -0.4 1,639,279 - -0.5 1,639,280 + -0.4 1,639,280 + -0.4 1,639,298 - -0.6 1,639,339 - +0.1 1,639,373 + +0.2 1,639,421 + -0.0 1,639,439 + +0.6 1,639,439 + +0.1 1,639,451 - +0.0 1,639,452 + +0.4 1,639,516 - -0.1 1,639,521 - +0.6 1,639,522 + -0.0 1,639,522 + -0.0 1,639,525 - +0.2 1,639,526 + +0.1 1,639,593 + -0.1 1,639,605 - -0.2 1,639,605 - -0.6 1,639,625 - -0.7 1,639,625 - -1.3 1,639,626 + -1.4 1,639,626 + -0.5 1,639,630 - -1.3 1,639,631 + -2.0 1,639,631 + -1.4 1,639,681 - -2.5 1,639,699 + -1.1 1,639,713 - -1.0 1,639,714 + -1.9 1,639,717 - MMP_RS08745 0.10 -3.1 1,639,736 - MMP_RS08745 0.14 -1.1 1,639,810 - MMP_RS08745 0.28 -0.2 1,639,874 - MMP_RS08745 0.39 -2.5 1,639,880 - MMP_RS08745 0.41 -1.9 1,639,881 + MMP_RS08745 0.41 -2.0 1,639,882 - MMP_RS08745 0.41 -1.7 1,639,883 + MMP_RS08745 0.41 -1.4 1,639,883 + MMP_RS08745 0.41 -2.2 1,639,883 + MMP_RS08745 0.41 -2.1 1,639,885 - MMP_RS08745 0.42 -1.8 1,639,886 + MMP_RS08745 0.42 -3.3 1,639,886 + MMP_RS08745 0.42 -1.8 1,639,887 - MMP_RS08745 0.42 -1.8 1,639,889 - MMP_RS08745 0.42 -3.0 1,639,889 - MMP_RS08745 0.42 -1.4 1,639,931 - MMP_RS08745 0.50 -2.0 1,640,109 + MMP_RS08745 0.83 -1.5 1,640,109 + MMP_RS08745 0.83 -1.7 1,640,120 + MMP_RS08745 0.85 -0.6 1,640,196 - +0.6 1,640,244 + +0.1 1,640,244 + +0.2 1,640,245 - +0.1 1,640,245 - +0.2 1,640,249 - +1.0 1,640,250 + -0.3 1,640,250 + +0.2 1,640,250 + +0.4 1,640,250 + +0.3 1,640,252 - +0.3 1,640,262 - +0.2 1,640,412 + -2.1 1,640,450 - +0.7 1,640,450 - +0.4 1,640,451 + +0.4 1,640,451 + +0.4 1,640,451 + -0.0 1,640,455 - -0.0 1,640,466 - +0.1 1,640,479 + +0.1 1,640,479 + -0.1 1,640,601 - MMP_RS08750 0.38 +0.2 1,640,601 - MMP_RS08750 0.38 -0.0 1,640,602 + MMP_RS08750 0.39 +0.2 1,640,736 - +0.3 1,640,752 + +0.3 1,640,755 + -0.5 1,640,756 - +0.2 1,640,756 - +0.1 1,640,757 + +0.1 1,640,763 - +0.5 1,640,925 - MMP_RS08755 0.13 +0.4 1,640,975 + MMP_RS08755 0.16 -0.2 1,640,981 + MMP_RS08755 0.16 +0.2 1,640,982 - MMP_RS08755 0.16 +0.7 1,641,010 - MMP_RS08755 0.18 +0.1 1,641,082 - MMP_RS08755 0.23 -0.2 1,641,084 - MMP_RS08755 0.23 +0.1 1,641,106 + MMP_RS08755 0.24 -0.0 1,641,166 + MMP_RS08755 0.28 +0.4
Or see this region's nucleotide sequence