Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07715 and MMP_RS07720 are separated by 12 nucleotides MMP_RS07720 and MMP_RS07725 are separated by 18 nucleotides MMP_RS07725 and MMP_RS07730 are separated by 23 nucleotides MMP_RS07730 and MMP_RS07735 are separated by 16 nucleotides
MMP_RS07715: MMP_RS07715 - YfcE family phosphodiesterase, at 1,462,031 to 1,462,522
_RS07715
MMP_RS07720: MMP_RS07720 - 4Fe-4S binding protein, at 1,462,535 to 1,462,951
_RS07720
MMP_RS07725: MMP_RS07725 - 4Fe-4S dicluster domain-containing protein, at 1,462,970 to 1,463,473
_RS07725
MMP_RS07730: MMP_RS07730 - pyruvate synthase subunit beta, at 1,463,497 to 1,464,393
_RS07730
MMP_RS07735: MMP_RS07735 - 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha, at 1,464,410 to 1,465,573
_RS07735
Position (kb)
1463
1464
1465 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1462.559 kb on + strand at 1462.597 kb on - strand, within MMP_RS07720 at 1462.605 kb on - strand, within MMP_RS07720 at 1462.609 kb on + strand, within MMP_RS07720 at 1462.624 kb on - strand, within MMP_RS07720 at 1462.644 kb on + strand, within MMP_RS07720 at 1462.644 kb on + strand, within MMP_RS07720 at 1462.739 kb on - strand, within MMP_RS07720 at 1462.740 kb on + strand, within MMP_RS07720 at 1462.740 kb on + strand, within MMP_RS07720 at 1462.740 kb on + strand, within MMP_RS07720 at 1462.740 kb on + strand, within MMP_RS07720 at 1462.769 kb on - strand, within MMP_RS07720 at 1462.769 kb on - strand, within MMP_RS07720 at 1462.772 kb on - strand, within MMP_RS07720 at 1462.775 kb on - strand, within MMP_RS07720 at 1462.775 kb on - strand, within MMP_RS07720 at 1462.814 kb on - strand, within MMP_RS07720 at 1462.814 kb on - strand, within MMP_RS07720 at 1462.814 kb on - strand, within MMP_RS07720 at 1462.815 kb on + strand, within MMP_RS07720 at 1462.853 kb on + strand, within MMP_RS07720 at 1462.888 kb on - strand, within MMP_RS07720 at 1462.888 kb on - strand, within MMP_RS07720 at 1462.889 kb on + strand, within MMP_RS07720 at 1462.933 kb on - strand at 1462.943 kb on - strand at 1462.944 kb on + strand at 1462.979 kb on + strand at 1462.996 kb on - strand at 1463.202 kb on - strand, within MMP_RS07725 at 1463.203 kb on + strand, within MMP_RS07725 at 1463.317 kb on - strand, within MMP_RS07725 at 1463.332 kb on - strand, within MMP_RS07725 at 1463.740 kb on + strand, within MMP_RS07730 at 1463.848 kb on - strand, within MMP_RS07730 at 1463.892 kb on - strand, within MMP_RS07730 at 1463.893 kb on + strand, within MMP_RS07730 at 1464.006 kb on - strand, within MMP_RS07730 at 1464.393 kb on - strand at 1464.518 kb on - strand at 1464.773 kb on - strand, within MMP_RS07735 at 1464.993 kb on - strand, within MMP_RS07735
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,462,559 + -0.8 1,462,597 - MMP_RS07720 0.15 +0.3 1,462,605 - MMP_RS07720 0.17 -0.5 1,462,609 + MMP_RS07720 0.18 +0.0 1,462,624 - MMP_RS07720 0.21 -0.6 1,462,644 + MMP_RS07720 0.26 -0.2 1,462,644 + MMP_RS07720 0.26 -0.1 1,462,739 - MMP_RS07720 0.49 -0.8 1,462,740 + MMP_RS07720 0.49 +0.3 1,462,740 + MMP_RS07720 0.49 -0.5 1,462,740 + MMP_RS07720 0.49 -1.0 1,462,740 + MMP_RS07720 0.49 -0.9 1,462,769 - MMP_RS07720 0.56 -0.7 1,462,769 - MMP_RS07720 0.56 -0.4 1,462,772 - MMP_RS07720 0.57 -0.2 1,462,775 - MMP_RS07720 0.58 -0.5 1,462,775 - MMP_RS07720 0.58 -0.5 1,462,814 - MMP_RS07720 0.67 -0.2 1,462,814 - MMP_RS07720 0.67 +0.0 1,462,814 - MMP_RS07720 0.67 -0.5 1,462,815 + MMP_RS07720 0.67 -0.3 1,462,853 + MMP_RS07720 0.76 -0.2 1,462,888 - MMP_RS07720 0.85 -0.5 1,462,888 - MMP_RS07720 0.85 -0.2 1,462,889 + MMP_RS07720 0.85 +0.1 1,462,933 - -0.4 1,462,943 - +0.1 1,462,944 + -0.2 1,462,979 + -0.2 1,462,996 - -0.3 1,463,202 - MMP_RS07725 0.46 +0.6 1,463,203 + MMP_RS07725 0.46 +0.1 1,463,317 - MMP_RS07725 0.69 +0.3 1,463,332 - MMP_RS07725 0.72 -0.2 1,463,740 + MMP_RS07730 0.27 -2.3 1,463,848 - MMP_RS07730 0.39 -1.5 1,463,892 - MMP_RS07730 0.44 -1.9 1,463,893 + MMP_RS07730 0.44 -1.4 1,464,006 - MMP_RS07730 0.57 -0.7 1,464,393 - -0.0 1,464,518 - -0.9 1,464,773 - MMP_RS07735 0.31 -1.1 1,464,993 - MMP_RS07735 0.50 -3.3
Or see this region's nucleotide sequence