Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07545

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07535 and MMP_RS07540 are separated by 15 nucleotidesMMP_RS07540 and MMP_RS07545 are separated by 19 nucleotidesMMP_RS07545 and MMP_RS07550 are separated by 13 nucleotides MMP_RS07535: MMP_RS07535 - 4Fe-4S binding protein, at 1,426,906 to 1,427,664 _RS07535 MMP_RS07540: MMP_RS07540 - CBS domain-containing protein, at 1,427,680 to 1,428,321 _RS07540 MMP_RS07545: MMP_RS07545 - HTH domain-containing protein, at 1,428,341 to 1,428,736 _RS07545 MMP_RS07550: MMP_RS07550 - L-serine ammonia-lyase iron-sulfur-dependent subunit alpha, at 1,428,750 to 1,429,940 _RS07550 Position (kb) 1428 1429Strain fitness (log2 ratio) -2 -1 0 1at 1427.380 kb on + strand, within MMP_RS07535at 1427.381 kb on - strand, within MMP_RS07535at 1427.381 kb on - strand, within MMP_RS07535at 1427.382 kb on + strand, within MMP_RS07535at 1427.423 kb on - strand, within MMP_RS07535at 1427.517 kb on - strand, within MMP_RS07535at 1427.523 kb on + strand, within MMP_RS07535at 1427.534 kb on - strand, within MMP_RS07535at 1427.586 kb on - strand, within MMP_RS07535at 1427.586 kb on - strand, within MMP_RS07535at 1427.586 kb on - strand, within MMP_RS07535at 1427.587 kb on + strand, within MMP_RS07535at 1427.587 kb on + strand, within MMP_RS07535at 1427.663 kb on + strandat 1427.762 kb on + strand, within MMP_RS07540at 1427.898 kb on + strand, within MMP_RS07540at 1427.940 kb on - strand, within MMP_RS07540at 1427.953 kb on - strand, within MMP_RS07540at 1427.968 kb on + strand, within MMP_RS07540at 1428.202 kb on + strand, within MMP_RS07540at 1428.358 kb on - strandat 1428.364 kb on - strandat 1428.483 kb on + strand, within MMP_RS07545at 1428.566 kb on - strand, within MMP_RS07545at 1428.777 kb on - strandat 1428.876 kb on - strand, within MMP_RS07550at 1428.958 kb on + strand, within MMP_RS07550at 1429.071 kb on - strand, within MMP_RS07550at 1429.107 kb on + strand, within MMP_RS07550at 1429.299 kb on + strand, within MMP_RS07550at 1429.307 kb on - strand, within MMP_RS07550at 1429.386 kb on - strand, within MMP_RS07550at 1429.387 kb on + strand, within MMP_RS07550at 1429.418 kb on - strand, within MMP_RS07550at 1429.418 kb on - strand, within MMP_RS07550at 1429.418 kb on - strand, within MMP_RS07550at 1429.419 kb on + strand, within MMP_RS07550at 1429.419 kb on + strand, within MMP_RS07550at 1429.420 kb on - strand, within MMP_RS07550at 1429.421 kb on + strand, within MMP_RS07550at 1429.494 kb on + strand, within MMP_RS07550at 1429.641 kb on - strand, within MMP_RS07550at 1429.661 kb on - strand, within MMP_RS07550at 1429.714 kb on + strand, within MMP_RS07550

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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1,427,380 + MMP_RS07535 0.62 +0.3
1,427,381 - MMP_RS07535 0.63 -1.0
1,427,381 - MMP_RS07535 0.63 -0.6
1,427,382 + MMP_RS07535 0.63 -1.1
1,427,423 - MMP_RS07535 0.68 -0.6
1,427,517 - MMP_RS07535 0.81 -0.8
1,427,523 + MMP_RS07535 0.81 -1.3
1,427,534 - MMP_RS07535 0.83 -0.9
1,427,586 - MMP_RS07535 0.90 -0.7
1,427,586 - MMP_RS07535 0.90 -0.2
1,427,586 - MMP_RS07535 0.90 -0.9
1,427,587 + MMP_RS07535 0.90 -0.7
1,427,587 + MMP_RS07535 0.90 -0.1
1,427,663 + -0.2
1,427,762 + MMP_RS07540 0.13 +0.3
1,427,898 + MMP_RS07540 0.34 +0.2
1,427,940 - MMP_RS07540 0.40 +0.2
1,427,953 - MMP_RS07540 0.43 -0.6
1,427,968 + MMP_RS07540 0.45 +0.3
1,428,202 + MMP_RS07540 0.81 +0.6
1,428,358 - -1.8
1,428,364 - -1.3
1,428,483 + MMP_RS07545 0.36 -1.9
1,428,566 - MMP_RS07545 0.57 -0.7
1,428,777 - -0.1
1,428,876 - MMP_RS07550 0.11 +0.5
1,428,958 + MMP_RS07550 0.17 +0.0
1,429,071 - MMP_RS07550 0.27 +0.0
1,429,107 + MMP_RS07550 0.30 +0.3
1,429,299 + MMP_RS07550 0.46 +0.8
1,429,307 - MMP_RS07550 0.47 +0.2
1,429,386 - MMP_RS07550 0.53 +0.3
1,429,387 + MMP_RS07550 0.53 +0.0
1,429,418 - MMP_RS07550 0.56 -0.7
1,429,418 - MMP_RS07550 0.56 +0.3
1,429,418 - MMP_RS07550 0.56 +0.5
1,429,419 + MMP_RS07550 0.56 +0.6
1,429,419 + MMP_RS07550 0.56 +0.5
1,429,420 - MMP_RS07550 0.56 -0.1
1,429,421 + MMP_RS07550 0.56 -0.1
1,429,494 + MMP_RS07550 0.62 -0.2
1,429,641 - MMP_RS07550 0.75 -0.1
1,429,661 - MMP_RS07550 0.76 +0.3
1,429,714 + MMP_RS07550 0.81 +0.4

Or see this region's nucleotide sequence