Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07425 and MMP_RS07430 are separated by 10 nucleotides MMP_RS07430 and MMP_RS07435 are separated by 19 nucleotides MMP_RS07435 and MMP_RS07440 are separated by 39 nucleotides MMP_RS07440 and MMP_RS07445 are separated by 184 nucleotides
MMP_RS07425: MMP_RS07425 - GTP-binding protein, at 1,414,033 to 1,415,142
_RS07425
MMP_RS07430: MMP_RS07430 - type II methionyl aminopeptidase, at 1,415,153 to 1,416,040
_RS07430
MMP_RS07435: MMP_RS07435 - GMP synthase subunit A, at 1,416,060 to 1,416,629
_RS07435
MMP_RS07440: MMP_RS07440 - ZPR1 zinc finger domain-containing protein, at 1,416,669 to 1,417,241
_RS07440
MMP_RS07445: MMP_RS07445 - helix-turn-helix domain-containing protein, at 1,417,426 to 1,418,064
_RS07445
Position (kb)
1416
1417 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1415.110 kb on + strand at 1415.112 kb on + strand at 1415.515 kb on + strand at 1415.543 kb on + strand at 1415.652 kb on - strand at 1415.652 kb on - strand at 1415.766 kb on - strand at 1415.771 kb on + strand at 1415.824 kb on + strand at 1415.853 kb on + strand at 1415.996 kb on + strand at 1416.120 kb on - strand, within MMP_RS07435 at 1416.130 kb on - strand, within MMP_RS07435 at 1416.234 kb on + strand, within MMP_RS07435 at 1416.446 kb on + strand, within MMP_RS07435 at 1416.627 kb on - strand at 1416.627 kb on - strand at 1416.640 kb on - strand at 1416.685 kb on + strand at 1416.686 kb on - strand at 1416.686 kb on - strand at 1416.689 kb on - strand at 1417.056 kb on + strand at 1417.226 kb on - strand at 1417.226 kb on - strand at 1417.350 kb on + strand at 1417.354 kb on + strand at 1417.458 kb on - strand at 1417.627 kb on + strand, within MMP_RS07445
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,415,110 + -0.9 1,415,112 + +0.2 1,415,515 + -2.8 1,415,543 + -2.1 1,415,652 - -0.5 1,415,652 - -1.8 1,415,766 - -1.5 1,415,771 + -0.6 1,415,824 + -0.3 1,415,853 + -2.3 1,415,996 + -0.8 1,416,120 - MMP_RS07435 0.11 -0.5 1,416,130 - MMP_RS07435 0.12 -0.9 1,416,234 + MMP_RS07435 0.31 -0.4 1,416,446 + MMP_RS07435 0.68 -1.2 1,416,627 - +0.2 1,416,627 - +0.8 1,416,640 - +0.5 1,416,685 + -0.5 1,416,686 - -0.0 1,416,686 - +0.3 1,416,689 - +0.1 1,417,056 + -2.6 1,417,226 - -2.1 1,417,226 - -2.6 1,417,350 + -0.1 1,417,354 + -1.2 1,417,458 - -1.0 1,417,627 + MMP_RS07445 0.31 +0.3
Or see this region's nucleotide sequence