Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05545

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,062,912	+		MMP_RS05535	0.83	+0.4
1,062,912	+		MMP_RS05535	0.83	+0.9
1,062,999	-				+0.8
1,063,000	+				-0.6
1,063,005	+				+0.5
1,063,008	-				+0.3
1,063,008	-				+0.1
1,063,008	-				-0.3
1,063,033	-				+1.0
1,063,033	-				+0.0
1,063,034	+				+0.0
1,063,041	-				+1.0
1,063,041	-				+0.2
1,063,041	-				+1.1
1,063,041	-				+0.5
1,063,042	+				+1.6
1,063,042	+				+1.2
1,063,042	+				+1.2
1,063,042	+				-0.2
1,063,061	+				+1.6
1,063,071	+				+1.3
1,063,097	+				+0.2
1,063,154	+		MMP_RS05540	0.10	-0.1
1,063,189	+		MMP_RS05540	0.19	+0.2
1,063,298	+		MMP_RS05540	0.45	-0.7
1,063,398	-		MMP_RS05540	0.68	-2.3
1,063,418	-		MMP_RS05540	0.73	-1.5
1,063,419	+		MMP_RS05540	0.73	-1.7
1,063,419	+		MMP_RS05540	0.73	-2.8
1,063,419	+		MMP_RS05540	0.73	-1.7
1,063,532	-				-0.7
1,063,573	+				-1.1
1,063,584	-				-1.1
1,063,735	-		MMP_RS05545	0.17	-0.4
1,063,736	+		MMP_RS05545	0.17	+1.8
1,063,763	-		MMP_RS05545	0.19	-0.5
1,063,763	-		MMP_RS05545	0.19	-1.0
1,063,769	-		MMP_RS05545	0.20	-0.4
1,063,851	+		MMP_RS05545	0.27	-0.9
1,063,943	-		MMP_RS05545	0.35	-1.3
1,064,087	+		MMP_RS05545	0.48	-1.1
1,064,684	+				-1.2
1,064,688	+				-0.3
1,064,691	-				-0.5
1,064,692	+				-0.7
1,064,694	+				-1.0
1,064,694	+				-0.5
1,064,695	-				-0.5
1,064,695	-				-1.6
1,064,695	-				+0.3
1,064,696	+				-1.1
1,064,696	+				-1.3
1,064,696	+				-1.3
1,064,696	+				-0.3
1,064,709	+				-0.5
1,064,709	+				-0.9
1,064,718	+				-0.1
1,064,751	-				-0.7
1,064,754	-				-0.8
1,064,754	-				-0.5
1,064,754	-				-0.9
1,064,755	+				-0.5
1,064,755	+				-0.7
1,064,755	+				-0.6
1,064,755	+				+0.2
1,064,756	-				-1.2
1,064,756	-				-1.2
1,064,756	-				-1.6
1,064,756	-				-1.3
1,064,756	-				+0.4
1,064,757	+				-0.8
1,064,757	+				-0.6
1,064,757	+				-1.0
1,064,757	+				-0.7
1,064,757	+				-0.8
1,064,757	+				-0.2
1,064,758	-				-0.5
1,064,758	-				-1.0
1,064,758	-				-1.1
1,064,758	-				-0.7
1,064,758	-				-0.4
1,064,758	-				-0.4
1,064,759	+				-0.9
1,064,759	+				-0.0
1,064,759	+				+0.3
1,064,759	+				-0.2
1,064,759	+				-0.6
1,064,759	+				-0.6
1,064,759	+				-0.5
1,064,759	+				-0.5
1,064,759	+				-0.9
1,064,762	-				-0.7
1,064,763	+				-0.4
1,064,763	+				-0.4
1,064,763	+				+0.0
1,064,777	+				+0.1
1,064,784	-				-0.5
1,064,858	-				-1.4
1,064,859	+				-1.4
1,065,006	-		MMP_RS05550	0.53	-2.7
1,065,213	+		MMP_RS05555	0.32	-1.2
1,065,276	+		MMP_RS05555	0.58	-3.1
1,065,376	-				+0.1
1,065,381	-				+0.2
1,065,387	-				+0.0
1,065,457	-				+0.1
1,065,457	-				-0.4
1,065,463	+				+0.3
1,065,474	-				-0.6
1,065,474	-				+0.0
1,065,474	-				-0.8
1,065,528	-		MMP_RS05560	0.17	+0.0
1,065,528	-		MMP_RS05560	0.17	+1.3
1,065,533	+		MMP_RS05560	0.18	-1.4
1,065,533	+		MMP_RS05560	0.18	-0.3
1,065,535	+		MMP_RS05560	0.18	+0.0
1,065,555	+		MMP_RS05560	0.23	-0.3
1,065,607	-		MMP_RS05560	0.34	-0.1
1,065,608	+		MMP_RS05560	0.34	-0.6
1,065,608	+		MMP_RS05560	0.34	+0.3
1,065,610	+		MMP_RS05560	0.34	+0.5