Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05450

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,044,552	+				-0.6
1,044,552	+				-0.3
1,044,552	+				-0.3
1,044,588	+				-0.0
1,044,634	-				-0.2
1,044,654	-				-0.7
1,044,655	+				+0.3
1,044,671	-				+0.6
1,044,678	-				-0.2
1,044,742	+		MMP_RS05445	0.12	-0.8
1,044,758	+		MMP_RS05445	0.14	-0.5
1,044,768	-		MMP_RS05445	0.15	-1.4
1,044,825	-		MMP_RS05445	0.22	-0.9
1,044,825	-		MMP_RS05445	0.22	-0.9
1,044,825	-		MMP_RS05445	0.22	-1.3
1,044,826	+		MMP_RS05445	0.22	-0.5
1,044,826	+		MMP_RS05445	0.22	-0.9
1,044,888	-		MMP_RS05445	0.29	-1.1
1,044,948	+		MMP_RS05445	0.36	-1.0
1,044,955	-		MMP_RS05445	0.37	+0.1
1,044,955	-		MMP_RS05445	0.37	-0.1
1,045,136	+		MMP_RS05445	0.57	-0.6
1,045,178	+		MMP_RS05445	0.62	-1.0
1,045,321	+		MMP_RS05445	0.78	-0.1
1,045,508	+				-0.6
1,045,538	+				-1.0
1,045,706	+		MMP_RS05450	0.28	-0.6
1,045,746	-		MMP_RS05450	0.35	-0.3
1,045,747	+		MMP_RS05450	0.35	-0.7
1,045,749	+		MMP_RS05450	0.36	-0.7
1,046,134	-				-0.5
1,046,135	+				-0.1
1,046,135	+				-0.4
1,046,137	+				-0.5
1,046,139	+				-0.1
1,046,139	+				+0.1
1,046,148	+				-0.0
1,046,186	+				+0.4
1,046,193	-				-0.1
1,046,217	-				+0.1
1,046,221	-				+0.0
1,046,232	-				+0.1
1,046,233	+				+0.1
1,046,293	+		MMP_RS05455	0.19	-0.1
1,046,295	-		MMP_RS05455	0.19	+0.1
1,046,348	-		MMP_RS05455	0.37	-0.0
1,046,354	-		MMP_RS05455	0.39	-0.2
1,046,402	-		MMP_RS05455	0.54	-0.1
1,046,436	+		MMP_RS05455	0.65	+0.4
1,046,474	-		MMP_RS05455	0.78	-0.2
1,046,475	+		MMP_RS05455	0.78	+0.4
1,046,478	-		MMP_RS05455	0.79	+0.1
1,046,479	+		MMP_RS05455	0.79	+0.1
1,046,540	+				+1.0
1,046,540	+				-0.1
1,046,540	+				+0.1
1,046,552	-				-0.3
1,046,553	+				-0.2
1,046,579	+				-0.5
1,046,582	-				+0.7
1,046,582	-				+0.6
1,046,597	-				-0.4
1,046,598	+				-0.6
1,046,599	-				-0.8
1,046,823	+		MMP_RS05460	0.22	-0.2
1,046,904	-		MMP_RS05460	0.28	-0.4