Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05425

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,040,826	-		MMP_RS05415	0.55	+0.3
1,040,827	+		MMP_RS05415	0.55	-0.9
1,040,827	+		MMP_RS05415	0.55	-0.4
1,040,914	-		MMP_RS05415	0.79	+0.4
1,040,927	+		MMP_RS05415	0.83	+0.7
1,040,939	-		MMP_RS05415	0.86	+0.9
1,040,940	+		MMP_RS05415	0.86	-0.3
1,040,971	-				+0.3
1,040,971	-				-0.2
1,040,988	-				-0.1
1,040,992	-				+0.4
1,040,992	-				+0.7
1,040,993	+				-0.2
1,041,062	-				-0.4
1,041,065	+				+0.4
1,041,169	-		MMP_RS05420	0.31	-0.0
1,041,216	-		MMP_RS05420	0.43	-0.5
1,041,231	-		MMP_RS05420	0.47	+0.3
1,041,232	+		MMP_RS05420	0.47	-0.1
1,041,234	-		MMP_RS05420	0.48	-0.4
1,041,292	+		MMP_RS05420	0.63	+0.5
1,041,431	+				-0.4
1,041,431	+				-0.1
1,041,538	-		MMP_RS09020	0.53	-1.0
1,041,542	+		MMP_RS09020	0.55	-0.9
1,041,569	-		MMP_RS09020	0.71	-1.4
1,041,623	-				-0.0
1,041,644	+				-1.0
1,041,647	-				+0.4
1,041,647	-				-0.7
1,041,648	+				-0.1
1,041,653	+				-1.7
1,041,653	+				-0.5
1,041,728	-		MMP_RS05425	0.35	-0.2
1,041,728	-		MMP_RS05425	0.35	-0.2
1,041,728	-		MMP_RS05425	0.35	-0.5
1,041,728	-		MMP_RS05425	0.35	-0.5
1,041,728	-		MMP_RS05425	0.35	-1.3
1,041,729	+		MMP_RS05425	0.35	-0.7
1,041,810	+		MMP_RS05425	0.65	-0.3
1,041,833	-		MMP_RS05425	0.74	-1.0
1,041,834	+		MMP_RS05425	0.74	+0.2
1,041,834	+		MMP_RS05425	0.74	-0.2
1,041,916	+				+0.1
1,041,920	+				+0.2
1,041,981	+				-0.1
1,042,004	-		MMP_RS05430	0.10	-0.0
1,042,004	-		MMP_RS05430	0.10	-0.1
1,042,076	-		MMP_RS05430	0.21	+0.2
1,042,169	-		MMP_RS05430	0.35	-0.4
1,042,170	+		MMP_RS05430	0.36	-1.2
1,042,196	-		MMP_RS05430	0.40	-1.1
1,042,271	-		MMP_RS05430	0.51	-1.1
1,042,475	-		MMP_RS05430	0.83	-1.4
1,042,508	-		MMP_RS05430	0.88	-0.9
1,042,513	+		MMP_RS05430	0.89	-1.0
1,042,513	+		MMP_RS05430	0.89	-0.6
1,042,603	-				-0.4
1,042,631	+				-1.1
1,042,639	-				-0.2
1,042,640	+				-1.0
1,042,726	+				-1.1
1,042,768	-		MMP_RS05435	0.13	-0.6
1,042,768	-		MMP_RS05435	0.13	-0.2
1,042,769	+		MMP_RS05435	0.13	+0.2
1,042,820	-		MMP_RS05435	0.20	+0.3