Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04775

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
908,231	-				-1.2
908,231	-				-2.9
908,232	+				-1.6
908,294	-				-1.8
908,322	+				-1.3
908,362	-				-2.7
908,376	+				+0.5
908,376	+				-1.5
908,376	+				-2.6
908,376	+				-0.2
908,377	-				-1.5
908,377	-				-1.7
908,377	-				-1.2
908,378	+				-1.9
908,378	+				-2.1
908,378	+				-2.0
908,378	+				-2.5
908,378	+				-1.7
908,381	-				-1.0
908,381	-				-0.9
908,382	+				-1.3
908,418	-				-0.2
908,418	-				-0.1
908,463	-				-1.2
908,570	+				-2.1
908,654	-				-2.5
908,658	-				-1.3
908,659	+				-1.2
908,864	-				-0.9
909,183	+				-0.8
909,185	-				-3.2
909,243	+				-1.7
909,388	-		MMP_RS04775	0.14	-2.0
909,388	-		MMP_RS04775	0.14	-0.8
909,389	+		MMP_RS04775	0.14	-1.9
909,598	-		MMP_RS04775	0.31	-0.6
909,868	+		MMP_RS04775	0.52	-2.1
909,874	-		MMP_RS04775	0.53	-2.1
909,933	-				-0.1
910,015	+		MMP_RS04775	0.64	-0.8
910,015	+		MMP_RS04775	0.64	-1.5
910,239	-		MMP_RS04775	0.82	-4.3
910,393	+				-2.0
910,393	+				-3.6
910,393	+				-1.0
910,455	-				-1.2
910,472	-				-0.6
910,473	+				-0.4
910,473	+				-2.1
910,473	+				-0.6
910,477	+				-2.4
910,478	-				-1.7
910,524	-				-0.7
910,525	+				-2.1
910,529	-				-1.5
910,531	-				-0.5
910,531	-				-1.8
910,552	-				-0.1
910,559	-				-0.6
910,559	-				-0.2
910,560	+				-0.0
910,571	-				+0.4
910,571	-				-0.4
910,572	+				+0.3
910,576	+				+0.6
910,576	+				+0.1
910,593	+				-0.1
910,604	-				-1.9
910,610	-				-2.1
910,611	+				+0.5
910,611	+				+1.0
910,611	+				+0.3
910,613	-				-2.1
910,614	+				+0.3
910,614	+				+0.4
910,635	+				-3.5
910,687	+		MMP_RS04780	0.18	-2.5
910,687	+		MMP_RS04780	0.18	-1.0
910,844	-		MMP_RS04780	0.65	-1.1
910,845	+		MMP_RS04780	0.65	-2.1
910,845	+		MMP_RS04780	0.65	-1.4
910,846	-		MMP_RS04780	0.66	-2.2
910,898	-		MMP_RS04780	0.81	-1.4
910,924	+		MMP_RS04780	0.89	-2.7
910,927	+				-1.4
910,941	+				+0.6
910,941	+				-0.1
910,977	-				-0.2
910,977	-				+0.3
910,978	+				-0.1
910,978	+				-0.8
910,978	+				-0.5
910,992	-				-0.2
910,995	-				+0.2
910,995	-				-1.3
910,995	-				-0.2
910,996	+				+0.2
910,996	+				-0.2
910,996	+				-0.4
911,001	-				+0.2
911,001	-				+0.2
911,001	-				+0.1
911,002	+				+0.0
911,002	+				-0.1
911,005	-				+0.1
911,006	+				-0.1
911,009	-				+0.1
911,010	+				-0.0
911,022	-				-0.4
911,022	-				+0.6
911,023	+				+0.1
911,023	+				+0.2
911,024	-				+0.1
911,024	-				+0.1
911,024	-				+0.3
911,024	-				-0.1
911,024	-				-0.1
911,024	-				+0.1
911,024	-				-0.5
911,024	-				-0.0
911,024	-				+0.0
911,025	+				-0.2
911,025	+				+0.3
911,025	+				+0.0
911,025	+				+0.7
911,025	+				+0.6
911,025	+				+0.1
911,025	+				+0.2
911,025	+				-0.1
911,027	-				-0.1
911,027	-				+0.4
911,027	-				-0.1
911,027	-				-0.2
911,027	-				+0.2
911,027	-				+0.0
911,027	-				-0.3
911,027	-				+0.1
911,027	-				-0.5
911,027	-				-0.4
911,027	-				-0.4
911,028	+				+0.2
911,028	+				-0.2
911,028	+				+0.4
911,028	+				-0.2
911,028	+				+0.8
911,028	+				+0.3
911,028	+				+0.0
911,028	+				+0.0
911,028	+				+0.3
911,028	+				-0.0
911,028	+				-0.5
911,028	+				+0.1
911,029	-				-0.2
911,029	-				-0.1
911,029	-				+0.1
911,029	-				-0.1
911,029	-				+0.1
911,030	+				-0.0
911,030	+				+0.5
911,030	+				+0.4
911,030	+				-0.1
911,030	+				+0.2
911,030	+				-0.5
911,031	-				+0.1
911,031	-				-0.3
911,031	-				+0.0
911,031	-				-0.2
911,032	+				-0.2
911,032	+				-0.1
911,032	+				+0.6
911,051	+				+0.2
911,055	-				-0.2
911,055	-				-0.6
911,055	-				+0.0
911,055	-				+0.4
911,056	+				-0.5
911,056	+				-0.1
911,056	+				-0.2
911,056	+				+0.0
911,056	+				-0.1
911,056	+				-0.0
911,057	-				-0.2
911,057	-				+0.1
911,057	-				-0.1
911,057	-				-0.3
911,058	+				+0.4
911,058	+				-0.1
911,058	+				+0.1
911,091	+				+0.1
911,160	+		MMP_RS04785	0.13	+0.1
911,185	-		MMP_RS04785	0.17	+0.2
911,187	-		MMP_RS04785	0.18	+0.0
911,204	-		MMP_RS04785	0.20	-0.7
911,205	+		MMP_RS04785	0.20	+0.1
911,280	+		MMP_RS04785	0.32	+0.8
911,393	+		MMP_RS04785	0.49	+0.7
911,403	+		MMP_RS04785	0.51	-0.2
911,408	-		MMP_RS04785	0.51	-0.2
911,417	-		MMP_RS04785	0.53	+0.2
911,419	-		MMP_RS04785	0.53	+0.4
911,419	-		MMP_RS04785	0.53	+0.2
911,420	+		MMP_RS04785	0.53	+0.3
911,422	-		MMP_RS04785	0.54	-0.5
911,422	-		MMP_RS04785	0.54	+0.2
911,425	-		MMP_RS04785	0.54	-0.0
911,436	+		MMP_RS04785	0.56	-0.0
911,451	+		MMP_RS04785	0.58	-0.1
911,455	-		MMP_RS04785	0.59	+0.0
911,461	-		MMP_RS04785	0.60	+0.2
911,461	-		MMP_RS04785	0.60	+0.1