Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04550

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04545 and MMP_RS04550 are separated by 452 nucleotidesMMP_RS04550 and MMP_RS04555 are separated by 9 nucleotides MMP_RS04545: MMP_RS04545 - methyltransferase domain-containing protein, at 866,661 to 867,458 _RS04545 MMP_RS04550: MMP_RS04550 - S-layer protein, at 867,911 to 869,512 _RS04550 MMP_RS04555: MMP_RS04555 - 7 8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 869,522 to 870,580 _RS04555 Position (kb) 867 868 869 870Strain fitness (log2 ratio) -3 -2 -1 0 1at 866.914 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.916 kb on - strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.917 kb on + strand, within MMP_RS04545at 866.919 kb on - strand, within MMP_RS04545at 866.919 kb on - strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.920 kb on + strand, within MMP_RS04545at 866.925 kb on + strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.926 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.938 kb on - strand, within MMP_RS04545at 866.939 kb on + strand, within MMP_RS04545at 866.939 kb on + strand, within MMP_RS04545at 866.997 kb on + strand, within MMP_RS04545at 866.997 kb on + strand, within MMP_RS04545at 866.999 kb on - strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.000 kb on + strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.001 kb on - strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.002 kb on + strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.003 kb on - strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.004 kb on + strand, within MMP_RS04545at 867.036 kb on - strand, within MMP_RS04545at 867.042 kb on + strand, within MMP_RS04545at 867.061 kb on - strand, within MMP_RS04545at 867.062 kb on + strand, within MMP_RS04545at 867.062 kb on + strand, within MMP_RS04545at 867.100 kb on + strand, within MMP_RS04545at 867.100 kb on + strand, within MMP_RS04545at 867.124 kb on + strand, within MMP_RS04545at 867.137 kb on - strand, within MMP_RS04545at 867.140 kb on - strand, within MMP_RS04545at 867.141 kb on + strand, within MMP_RS04545at 867.150 kb on - strand, within MMP_RS04545at 867.150 kb on - strand, within MMP_RS04545at 867.156 kb on + strand, within MMP_RS04545at 867.180 kb on - strand, within MMP_RS04545at 867.181 kb on + strand, within MMP_RS04545at 867.181 kb on + strand, within MMP_RS04545at 867.182 kb on - strand, within MMP_RS04545at 867.182 kb on - strand, within MMP_RS04545at 867.183 kb on + strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.186 kb on - strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.187 kb on + strand, within MMP_RS04545at 867.261 kb on + strand, within MMP_RS04545at 867.269 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.326 kb on - strand, within MMP_RS04545at 867.364 kb on - strand, within MMP_RS04545at 867.365 kb on + strand, within MMP_RS04545at 867.555 kb on + strandat 867.555 kb on + strandat 867.568 kb on - strandat 867.684 kb on - strandat 867.733 kb on - strandat 867.733 kb on - strandat 867.733 kb on - strandat 867.734 kb on + strandat 867.734 kb on + strandat 867.737 kb on - strandat 867.738 kb on + strandat 867.738 kb on + strandat 867.743 kb on - strandat 867.743 kb on - strandat 867.744 kb on + strandat 867.744 kb on + strandat 867.747 kb on - strandat 867.748 kb on + strandat 867.879 kb on + strandat 867.897 kb on + strandat 867.897 kb on + strandat 867.909 kb on + strandat 867.919 kb on - strandat 867.923 kb on + strandat 868.014 kb on - strandat 868.014 kb on - strandat 868.057 kb on - strandat 868.057 kb on - strandat 868.067 kb on + strandat 868.146 kb on - strand, within MMP_RS04550at 868.198 kb on - strand, within MMP_RS04550at 868.218 kb on - strand, within MMP_RS04550at 868.272 kb on + strand, within MMP_RS04550at 868.272 kb on + strand, within MMP_RS04550at 868.276 kb on + strand, within MMP_RS04550at 868.276 kb on + strand, within MMP_RS04550at 868.279 kb on - strand, within MMP_RS04550at 868.280 kb on + strand, within MMP_RS04550at 868.280 kb on + strand, within MMP_RS04550at 868.303 kb on - strand, within MMP_RS04550at 868.490 kb on - strand, within MMP_RS04550at 868.490 kb on - strand, within MMP_RS04550at 868.491 kb on + strand, within MMP_RS04550at 868.491 kb on + strand, within MMP_RS04550at 868.492 kb on - strand, within MMP_RS04550at 868.492 kb on - strand, within MMP_RS04550at 868.493 kb on + strand, within MMP_RS04550at 868.493 kb on + strand, within MMP_RS04550at 868.493 kb on + strand, within MMP_RS04550at 868.493 kb on + strand, within MMP_RS04550at 868.501 kb on + strand, within MMP_RS04550at 868.536 kb on - strand, within MMP_RS04550at 868.562 kb on + strand, within MMP_RS04550at 868.569 kb on + strand, within MMP_RS04550at 868.591 kb on + strand, within MMP_RS04550at 868.671 kb on + strand, within MMP_RS04550at 868.723 kb on - strand, within MMP_RS04550at 868.724 kb on + strand, within MMP_RS04550at 868.727 kb on - strand, within MMP_RS04550at 868.728 kb on + strand, within MMP_RS04550at 868.728 kb on + strand, within MMP_RS04550at 868.730 kb on + strand, within MMP_RS04550at 868.734 kb on - strand, within MMP_RS04550at 868.734 kb on - strand, within MMP_RS04550at 868.735 kb on + strand, within MMP_RS04550at 868.749 kb on - strand, within MMP_RS04550at 868.778 kb on - strand, within MMP_RS04550at 868.846 kb on - strand, within MMP_RS04550at 868.878 kb on - strand, within MMP_RS04550at 868.932 kb on + strand, within MMP_RS04550at 868.950 kb on - strand, within MMP_RS04550at 868.951 kb on + strand, within MMP_RS04550at 868.952 kb on - strand, within MMP_RS04550at 868.953 kb on + strand, within MMP_RS04550at 868.954 kb on - strand, within MMP_RS04550at 869.006 kb on + strand, within MMP_RS04550at 869.024 kb on - strand, within MMP_RS04550at 869.025 kb on + strand, within MMP_RS04550at 869.025 kb on + strand, within MMP_RS04550at 869.062 kb on - strand, within MMP_RS04550at 869.063 kb on + strand, within MMP_RS04550at 869.122 kb on - strand, within MMP_RS04550at 869.122 kb on - strand, within MMP_RS04550at 869.122 kb on - strand, within MMP_RS04550at 869.122 kb on - strand, within MMP_RS04550at 869.122 kb on - strand, within MMP_RS04550at 869.122 kb on - strand, within MMP_RS04550at 869.123 kb on + strand, within MMP_RS04550at 869.123 kb on + strand, within MMP_RS04550at 869.123 kb on + strand, within MMP_RS04550at 869.123 kb on + strand, within MMP_RS04550at 869.133 kb on - strand, within MMP_RS04550at 869.134 kb on + strand, within MMP_RS04550at 869.134 kb on + strand, within MMP_RS04550at 869.167 kb on - strand, within MMP_RS04550at 869.168 kb on + strand, within MMP_RS04550at 869.170 kb on + strand, within MMP_RS04550at 869.223 kb on - strand, within MMP_RS04550at 869.223 kb on - strand, within MMP_RS04550at 869.223 kb on - strand, within MMP_RS04550at 869.253 kb on - strand, within MMP_RS04550at 869.274 kb on - strand, within MMP_RS04550at 869.275 kb on + strand, within MMP_RS04550at 869.320 kb on + strand, within MMP_RS04550at 869.358 kb on - strandat 869.362 kb on + strandat 869.406 kb on - strandat 869.464 kb on - strandat 869.465 kb on + strandat 869.518 kb on - strandat 869.524 kb on + strandat 869.569 kb on - strandat 869.570 kb on + strandat 869.572 kb on - strandat 869.574 kb on - strandat 869.575 kb on + strandat 869.575 kb on + strandat 869.609 kb on + strandat 869.876 kb on + strandat 869.940 kb on + strandat 869.980 kb on - strandat 869.985 kb on + strandat 869.996 kb on + strandat 870.047 kb on + strandat 870.167 kb on - strandat 870.173 kb on + strandat 870.225 kb on + strandat 870.225 kb on + strandat 870.225 kb on + strandat 870.242 kb on - strandat 870.353 kb on + strandat 870.406 kb on - strandat 870.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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866,914 - MMP_RS04545 0.32 -0.1
866,916 - MMP_RS04545 0.32 +0.2
866,916 - MMP_RS04545 0.32 +0.0
866,916 - MMP_RS04545 0.32 +0.1
866,916 - MMP_RS04545 0.32 -0.3
866,917 + MMP_RS04545 0.32 -0.1
866,917 + MMP_RS04545 0.32 -0.2
866,917 + MMP_RS04545 0.32 +0.4
866,917 + MMP_RS04545 0.32 -0.2
866,919 - MMP_RS04545 0.32 +0.4
866,919 - MMP_RS04545 0.32 -0.5
866,920 + MMP_RS04545 0.32 +0.3
866,920 + MMP_RS04545 0.32 -0.3
866,920 + MMP_RS04545 0.32 +0.2
866,920 + MMP_RS04545 0.32 -0.4
866,920 + MMP_RS04545 0.32 +0.2
866,920 + MMP_RS04545 0.32 +0.2
866,920 + MMP_RS04545 0.32 +0.1
866,925 + MMP_RS04545 0.33 +0.6
866,926 - MMP_RS04545 0.33 -0.0
866,926 - MMP_RS04545 0.33 +0.3
866,926 - MMP_RS04545 0.33 -0.3
866,938 - MMP_RS04545 0.35 +0.6
866,938 - MMP_RS04545 0.35 -0.2
866,938 - MMP_RS04545 0.35 -0.1
866,939 + MMP_RS04545 0.35 +0.3
866,939 + MMP_RS04545 0.35 -1.1
866,997 + MMP_RS04545 0.42 -0.1
866,997 + MMP_RS04545 0.42 -0.1
866,999 - MMP_RS04545 0.42 -0.1
867,000 + MMP_RS04545 0.42 +0.0
867,000 + MMP_RS04545 0.42 -0.7
867,000 + MMP_RS04545 0.42 -0.8
867,001 - MMP_RS04545 0.43 -0.1
867,001 - MMP_RS04545 0.43 +0.2
867,001 - MMP_RS04545 0.43 +0.3
867,001 - MMP_RS04545 0.43 -0.3
867,001 - MMP_RS04545 0.43 +0.1
867,002 + MMP_RS04545 0.43 +0.4
867,002 + MMP_RS04545 0.43 -0.1
867,002 + MMP_RS04545 0.43 +0.1
867,002 + MMP_RS04545 0.43 +0.2
867,002 + MMP_RS04545 0.43 +0.2
867,002 + MMP_RS04545 0.43 +0.3
867,002 + MMP_RS04545 0.43 -0.2
867,003 - MMP_RS04545 0.43 -0.2
867,003 - MMP_RS04545 0.43 -0.5
867,003 - MMP_RS04545 0.43 -0.3
867,004 + MMP_RS04545 0.43 -0.2
867,004 + MMP_RS04545 0.43 -0.3
867,004 + MMP_RS04545 0.43 -0.0
867,004 + MMP_RS04545 0.43 -0.1
867,036 - MMP_RS04545 0.47 -0.3
867,042 + MMP_RS04545 0.48 -0.2
867,061 - MMP_RS04545 0.50 -0.1
867,062 + MMP_RS04545 0.50 -0.4
867,062 + MMP_RS04545 0.50 +0.1
867,100 + MMP_RS04545 0.55 -0.1
867,100 + MMP_RS04545 0.55 -0.5
867,124 + MMP_RS04545 0.58 +0.2
867,137 - MMP_RS04545 0.60 -0.2
867,140 - MMP_RS04545 0.60 +0.3
867,141 + MMP_RS04545 0.60 -0.2
867,150 - MMP_RS04545 0.61 -0.0
867,150 - MMP_RS04545 0.61 +0.1
867,156 + MMP_RS04545 0.62 -0.2
867,180 - MMP_RS04545 0.65 -0.2
867,181 + MMP_RS04545 0.65 +0.2
867,181 + MMP_RS04545 0.65 -0.1
867,182 - MMP_RS04545 0.65 +0.0
867,182 - MMP_RS04545 0.65 +0.0
867,183 + MMP_RS04545 0.65 -0.0
867,186 - MMP_RS04545 0.66 -0.3
867,186 - MMP_RS04545 0.66 +0.3
867,186 - MMP_RS04545 0.66 +0.3
867,186 - MMP_RS04545 0.66 +0.5
867,187 + MMP_RS04545 0.66 -0.1
867,187 + MMP_RS04545 0.66 -0.2
867,187 + MMP_RS04545 0.66 -0.0
867,187 + MMP_RS04545 0.66 +0.9
867,261 + MMP_RS04545 0.75 -0.3
867,269 - MMP_RS04545 0.76 -0.6
867,326 - MMP_RS04545 0.83 -0.0
867,326 - MMP_RS04545 0.83 -0.1
867,326 - MMP_RS04545 0.83 +0.5
867,326 - MMP_RS04545 0.83 -0.2
867,364 - MMP_RS04545 0.88 -0.3
867,365 + MMP_RS04545 0.88 -0.2
867,555 + -0.1
867,555 + +0.2
867,568 - +0.1
867,684 - -0.0
867,733 - +0.0
867,733 - +0.2
867,733 - -0.1
867,734 + -0.1
867,734 + +0.2
867,737 - -0.2
867,738 + +1.5
867,738 + +0.2
867,743 - -0.7
867,743 - +0.2
867,744 + +0.3
867,744 + -0.2
867,747 - -0.2
867,748 + -0.3
867,879 + -0.5
867,897 + +0.3
867,897 + -0.2
867,909 + +0.2
867,919 - -0.5
867,923 + +0.2
868,014 - -1.8
868,014 - +0.1
868,057 - -0.3
868,057 - -0.2
868,067 + -0.1
868,146 - MMP_RS04550 0.15 +0.3
868,198 - MMP_RS04550 0.18 -0.2
868,218 - MMP_RS04550 0.19 -0.5
868,272 + MMP_RS04550 0.23 +0.2
868,272 + MMP_RS04550 0.23 +0.0
868,276 + MMP_RS04550 0.23 -0.5
868,276 + MMP_RS04550 0.23 +0.0
868,279 - MMP_RS04550 0.23 -0.4
868,280 + MMP_RS04550 0.23 -0.6
868,280 + MMP_RS04550 0.23 +0.3
868,303 - MMP_RS04550 0.24 +0.2
868,490 - MMP_RS04550 0.36 -0.2
868,490 - MMP_RS04550 0.36 +0.1
868,491 + MMP_RS04550 0.36 +0.2
868,491 + MMP_RS04550 0.36 +0.5
868,492 - MMP_RS04550 0.36 +0.0
868,492 - MMP_RS04550 0.36 +0.5
868,493 + MMP_RS04550 0.36 +0.1
868,493 + MMP_RS04550 0.36 -0.3
868,493 + MMP_RS04550 0.36 +0.2
868,493 + MMP_RS04550 0.36 -0.3
868,501 + MMP_RS04550 0.37 -0.1
868,536 - MMP_RS04550 0.39 +0.3
868,562 + MMP_RS04550 0.41 +0.3
868,569 + MMP_RS04550 0.41 -0.4
868,591 + MMP_RS04550 0.42 -0.2
868,671 + MMP_RS04550 0.47 +0.1
868,723 - MMP_RS04550 0.51 +0.2
868,724 + MMP_RS04550 0.51 -0.1
868,727 - MMP_RS04550 0.51 -0.0
868,728 + MMP_RS04550 0.51 -0.0
868,728 + MMP_RS04550 0.51 -0.3
868,730 + MMP_RS04550 0.51 +0.3
868,734 - MMP_RS04550 0.51 +0.1
868,734 - MMP_RS04550 0.51 -0.1
868,735 + MMP_RS04550 0.51 +0.4
868,749 - MMP_RS04550 0.52 +0.1
868,778 - MMP_RS04550 0.54 -0.4
868,846 - MMP_RS04550 0.58 -0.1
868,878 - MMP_RS04550 0.60 +0.4
868,932 + MMP_RS04550 0.64 -0.2
868,950 - MMP_RS04550 0.65 -0.2
868,951 + MMP_RS04550 0.65 -0.4
868,952 - MMP_RS04550 0.65 -0.0
868,953 + MMP_RS04550 0.65 -0.4
868,954 - MMP_RS04550 0.65 -0.7
869,006 + MMP_RS04550 0.68 -0.1
869,024 - MMP_RS04550 0.69 +0.2
869,025 + MMP_RS04550 0.70 -0.1
869,025 + MMP_RS04550 0.70 -0.2
869,062 - MMP_RS04550 0.72 +0.2
869,063 + MMP_RS04550 0.72 -0.2
869,122 - MMP_RS04550 0.76 -0.1
869,122 - MMP_RS04550 0.76 +0.5
869,122 - MMP_RS04550 0.76 -0.4
869,122 - MMP_RS04550 0.76 +0.0
869,122 - MMP_RS04550 0.76 -0.4
869,122 - MMP_RS04550 0.76 -0.0
869,123 + MMP_RS04550 0.76 +0.1
869,123 + MMP_RS04550 0.76 -0.1
869,123 + MMP_RS04550 0.76 +0.2
869,123 + MMP_RS04550 0.76 +0.1
869,133 - MMP_RS04550 0.76 +0.0
869,134 + MMP_RS04550 0.76 -0.0
869,134 + MMP_RS04550 0.76 +0.0
869,167 - MMP_RS04550 0.78 +0.2
869,168 + MMP_RS04550 0.78 +0.1
869,170 + MMP_RS04550 0.79 +0.0
869,223 - MMP_RS04550 0.82 -0.6
869,223 - MMP_RS04550 0.82 -0.2
869,223 - MMP_RS04550 0.82 +0.2
869,253 - MMP_RS04550 0.84 +0.1
869,274 - MMP_RS04550 0.85 +0.1
869,275 + MMP_RS04550 0.85 -0.3
869,320 + MMP_RS04550 0.88 +0.0
869,358 - -0.3
869,362 + -0.1
869,406 - +0.2
869,464 - +0.0
869,465 + -0.9
869,518 - +0.2
869,524 + +0.3
869,569 - -2.8
869,570 + -1.4
869,572 - -1.9
869,574 - -1.1
869,575 + -1.0
869,575 + -0.4
869,609 + -2.4
869,876 + -0.5
869,940 + -0.0
869,980 - -1.9
869,985 + -2.8
869,996 + -1.5
870,047 + -1.3
870,167 - -1.6
870,173 + -1.2
870,225 + -2.3
870,225 + -0.6
870,225 + -2.0
870,242 - -1.7
870,353 + -2.0
870,406 - -1.4
870,490 - -2.6

Or see this region's nucleotide sequence