Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03460 and MMP_RS03465 are separated by 41 nucleotides MMP_RS03465 and MMP_RS03470 are separated by 383 nucleotides MMP_RS03470 and MMP_RS03475 overlap by 4 nucleotides MMP_RS03475 and MMP_RS03480 are separated by 49 nucleotides
MMP_RS03460: MMP_RS03460 - U32 family peptidase, at 649,030 to 650,241
_RS03460
MMP_RS03465: MMP_RS03465 - adenine phosphoribosyltransferase, at 650,283 to 650,801
_RS03465
MMP_RS03470: MMP_RS03470 - phosphoadenosine phosphosulfate reductase family protein, at 651,185 to 652,060
_RS03470
MMP_RS03475: MMP_RS03475 - hypothetical protein, at 652,057 to 652,287
_RS03475
MMP_RS03480: MMP_RS03480 - SulP family inorganic anion transporter, at 652,337 to 653,956
_RS03480
Position (kb) 651
652
653 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 650.187 kb on - strand at 650.311 kb on + strand at 650.325 kb on - strand at 650.369 kb on - strand, within MMP_RS03465 at 650.805 kb on + strand at 650.900 kb on - strand at 650.901 kb on + strand at 650.904 kb on - strand at 650.905 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.919 kb on - strand at 650.922 kb on + strand at 650.925 kb on + strand at 650.930 kb on + strand at 650.960 kb on + strand at 650.978 kb on - strand at 651.003 kb on - strand at 651.003 kb on - strand at 651.003 kb on - strand at 651.004 kb on + strand at 651.042 kb on - strand at 651.102 kb on - strand at 651.139 kb on + strand at 651.147 kb on + strand at 651.163 kb on - strand at 651.170 kb on - strand at 651.511 kb on - strand, within MMP_RS03470 at 651.559 kb on + strand, within MMP_RS03470 at 651.751 kb on - strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.752 kb on + strand, within MMP_RS03470 at 651.780 kb on - strand, within MMP_RS03470 at 651.793 kb on - strand, within MMP_RS03470 at 651.793 kb on - strand, within MMP_RS03470 at 651.797 kb on - strand, within MMP_RS03470 at 651.804 kb on - strand, within MMP_RS03470 at 651.941 kb on + strand, within MMP_RS03470 at 652.137 kb on + strand, within MMP_RS03475 at 652.266 kb on - strand at 652.271 kb on - strand at 652.387 kb on + strand at 652.531 kb on - strand, within MMP_RS03480 at 652.531 kb on - strand, within MMP_RS03480 at 652.532 kb on + strand, within MMP_RS03480 at 652.578 kb on - strand, within MMP_RS03480 at 652.588 kb on - strand, within MMP_RS03480 at 652.922 kb on + strand, within MMP_RS03480 at 652.963 kb on + strand, within MMP_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 650,187 - +0.1 650,311 + -0.2 650,325 - +0.3 650,369 - MMP_RS03465 0.17 -0.0 650,805 + +0.2 650,900 - +0.1 650,901 + +0.0 650,904 - +0.1 650,905 + +0.1 650,908 + -0.6 650,908 + +0.3 650,919 - -0.6 650,922 + +0.2 650,925 + +0.1 650,930 + +0.3 650,960 + +0.3 650,978 - +0.2 651,003 - +0.0 651,003 - +0.5 651,003 - +0.3 651,004 + +0.7 651,042 - -0.1 651,102 - +0.1 651,139 + -0.3 651,147 + -0.3 651,163 - -0.7 651,170 - -0.2 651,511 - MMP_RS03470 0.37 -0.2 651,559 + MMP_RS03470 0.43 -0.5 651,751 - MMP_RS03470 0.65 -1.2 651,752 + MMP_RS03470 0.65 -0.6 651,752 + MMP_RS03470 0.65 -0.4 651,752 + MMP_RS03470 0.65 -0.3 651,752 + MMP_RS03470 0.65 -0.4 651,780 - MMP_RS03470 0.68 -1.0 651,793 - MMP_RS03470 0.69 -0.9 651,793 - MMP_RS03470 0.69 -0.8 651,797 - MMP_RS03470 0.70 -1.0 651,804 - MMP_RS03470 0.71 -0.8 651,941 + MMP_RS03470 0.86 -0.1 652,137 + MMP_RS03475 0.35 -3.1 652,266 - -0.0 652,271 - +0.2 652,387 + -0.1 652,531 - MMP_RS03480 0.12 -0.4 652,531 - MMP_RS03480 0.12 -0.0 652,532 + MMP_RS03480 0.12 +0.1 652,578 - MMP_RS03480 0.15 -0.7 652,588 - MMP_RS03480 0.15 -0.1 652,922 + MMP_RS03480 0.36 +0.1 652,963 + MMP_RS03480 0.39 +0.2
Or see this region's nucleotide sequence