Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02420 and MMP_RS02425 are separated by 119 nucleotides MMP_RS02425 and MMP_RS02430 are separated by 168 nucleotides
MMP_RS02420: MMP_RS02420 - DEAD/DEAH box helicase, at 450,214 to 451,830
_RS02420
MMP_RS02425: MMP_RS02425 - hypothetical protein, at 451,950 to 452,144
_RS02425
MMP_RS02430: MMP_RS02430 - hypothetical protein, at 452,313 to 453,959
_RS02430
Position (kb) 451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 451.154 kb on - strand at 451.239 kb on - strand at 451.240 kb on + strand at 451.276 kb on - strand at 451.335 kb on - strand at 451.336 kb on + strand at 451.338 kb on + strand at 451.496 kb on - strand at 451.602 kb on + strand at 451.614 kb on + strand at 451.707 kb on + strand at 451.832 kb on - strand at 451.958 kb on - strand at 451.988 kb on - strand, within MMP_RS02425 at 452.045 kb on - strand, within MMP_RS02425 at 452.049 kb on + strand, within MMP_RS02425 at 452.066 kb on - strand, within MMP_RS02425 at 452.082 kb on - strand, within MMP_RS02425 at 452.090 kb on - strand, within MMP_RS02425 at 452.107 kb on + strand, within MMP_RS02425 at 452.139 kb on - strand at 452.161 kb on - strand at 452.162 kb on + strand at 452.162 kb on + strand at 452.172 kb on - strand at 452.184 kb on - strand at 452.184 kb on - strand at 452.268 kb on + strand at 452.281 kb on - strand at 452.282 kb on + strand at 452.322 kb on - strand at 452.322 kb on - strand at 452.372 kb on - strand at 452.401 kb on - strand at 452.469 kb on + strand at 452.469 kb on + strand at 452.469 kb on + strand at 452.477 kb on - strand at 452.478 kb on + strand, within MMP_RS02430 at 452.481 kb on - strand, within MMP_RS02430 at 452.515 kb on - strand, within MMP_RS02430 at 452.558 kb on - strand, within MMP_RS02430 at 452.560 kb on - strand, within MMP_RS02430 at 452.601 kb on + strand, within MMP_RS02430 at 452.760 kb on + strand, within MMP_RS02430 at 452.791 kb on - strand, within MMP_RS02430 at 452.792 kb on + strand, within MMP_RS02430 at 452.862 kb on - strand, within MMP_RS02430 at 453.079 kb on + strand, within MMP_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 451,154 - -1.3 451,239 - -0.3 451,240 + -3.1 451,276 - -1.7 451,335 - -0.6 451,336 + -0.5 451,338 + -0.8 451,496 - -0.4 451,602 + -1.5 451,614 + -0.5 451,707 + -0.1 451,832 - -0.2 451,958 - -0.4 451,988 - MMP_RS02425 0.19 -0.1 452,045 - MMP_RS02425 0.49 +0.5 452,049 + MMP_RS02425 0.51 +0.1 452,066 - MMP_RS02425 0.59 -0.3 452,082 - MMP_RS02425 0.68 -0.0 452,090 - MMP_RS02425 0.72 +0.4 452,107 + MMP_RS02425 0.81 -0.5 452,139 - +0.1 452,161 - +0.1 452,162 + +0.7 452,162 + -0.4 452,172 - -0.0 452,184 - +0.1 452,184 - -0.3 452,268 + +0.0 452,281 - -0.4 452,282 + +0.5 452,322 - +0.2 452,322 - +0.5 452,372 - +0.7 452,401 - -0.3 452,469 + +0.5 452,469 + +0.5 452,469 + +0.3 452,477 - +0.1 452,478 + MMP_RS02430 0.10 +0.0 452,481 - MMP_RS02430 0.10 -0.4 452,515 - MMP_RS02430 0.12 +0.8 452,558 - MMP_RS02430 0.15 +0.1 452,560 - MMP_RS02430 0.15 +0.3 452,601 + MMP_RS02430 0.17 +0.3 452,760 + MMP_RS02430 0.27 +0.1 452,791 - MMP_RS02430 0.29 -0.6 452,792 + MMP_RS02430 0.29 -0.5 452,862 - MMP_RS02430 0.33 +0.2 453,079 + MMP_RS02430 0.47 -0.2
Or see this region's nucleotide sequence